prot_C-tenellus_contig7477.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7477.1.1
Unique Nameprot_C-tenellus_contig7477.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length268
Homology
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BLAST of mRNA_C-tenellus_contig7477.1.1 vs. uniprot
Match: D8LHR1_ECTSI (LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR1_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.300e-15
Identity = 36/72 (50.00%), Postives = 56/72 (77.78%), Query Frame = 0 
Query:    1 MLDLLARWVSRQPGLPMDSFAVALSTLGDRLASLVLVGAIILLDTDPRHRVLFASILSLELGSYWLQMVVAA 72
            + D+L+RW S +PG+PMD F V L+T+GDR + LVL+G+++LLD DPRH  +F  +L+L++ + WLQ+ VA+
Sbjct:  221 VFDILSRWASSRPGVPMDDFGVVLATMGDRFSYLVLLGSLVLLDKDPRHSQIFGGMLALDMTANWLQLSVAS 292
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7477.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHR1_ECTSI4.300e-1550.00LTD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 240..264
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..43
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 265..267
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..173
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..153
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 174..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7477contigC-tenellus_contig7477:347..3745 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7477.1.1mRNA_C-tenellus_contig7477.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7477 182..6461 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7477.1.1 ID=prot_C-tenellus_contig7477.1.1|Name=mRNA_C-tenellus_contig7477.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=268bp
MLDLLARWVSRQPGLPMDSFAVALSTLGDRLASLVLVGAIILLDTDPRHR
VLFASILSLELGSYWLQMVVAAGRASPPPIRIRGESFVDNGNGDTGIGAG
LGWAGDVGEGRNSIGGSSVGGRRGCGGWGGCLLRKSDAVRMDFVGHLMLR
QPGLLTLVSFGSEAFLFLSYSFLPAVSALLRYSPACYIGTPATFYDYGAF
SSTALGGRGLSGEMEEAVTGAPGVDAMFFSPILTWWLRPAWMALMVCCGV
RQLINVVQVCTYMWTSL*
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