prot_C-tenellus_contig7424.1.3 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7424.1.3
Unique Nameprot_C-tenellus_contig7424.1.3
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length459
Homology
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BLAST of mRNA_C-tenellus_contig7424.1.3 vs. uniprot
Match: A0A6H5JSQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSQ9_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.570e-33
Identity = 116/383 (30.29%), Postives = 176/383 (45.95%), Query Frame = 0 
Query:  106 GCAGIAHRDCWAGVYVSTLTGEVVLLTPEGRVLQSPGSTSSRTRGQDILWWGAKERTLEVIAYNGHGFT----LSK--KGTFQHMSMPAATIEETELIFESVSGTTSNSTESGPEQAFSLVRDNAGFVFPGCLYILSLPAWTRYP-GDPTTVRVILSDDGWIADVGG----TNW------------KAAWSHGNGATTEMRGGQFLSLSLGRSHQGDQEGRVLTLYTPDGGRTWIESTPPGQGAGIGKPVAV-----LSLEAPANVTLFPASPPIEPLLKHLSGYDGAREE---PVESGGRGDAGNNRGKTKVGGKLEEIVSVFEGQPLLLGRPAPGSLTRSGFLVVISRAVPRPKEKKEDLLCWFDGVGASAIWISWSMVLC 457
            GC  +  + CWAGVYV   T E+  L   GRV  SPG+ ++      + WW A+E  L     N   F+    +SK  +   +  ++   T E +  I ++V G  S    SG      LVRD  GFVFPGC+Y+LS+ + +     +   V V+L+ DG +    G      W              +W+ GN          FL + L  +       R + L + DGGRTW+  +       + K   V     LSL AP  +++FP +  + PL+++L+G +   +E   P+ +              +   L+ +V VFE QP+ L     G+      ++VISRAVPRP + + DL C  +GV   A+W+SW MVLC
Sbjct:    3 GC--VEGKRCWAGVYVDMATNEIWHLETGGRVYLSPGTAAADPLRGCLRWW-AEEDLLHTADCNEKVFSRVDVVSKMRRDPARAGTLAGFTAEVSSTI-DAVRGDGSAPANSGGIGKIRLVRDPFGFVFPGCMYVLSMQSGSSSKMANSDGVSVVLNRDGTVTSTAGGERVARWLFPRKKSLAGTNDESWASGNQVLLRFNT-DFLQVGLPATAWEVGGSRDVRLSSSDGGRTWLPVSECNSQFKLEKDCDVDSRIILSLVAPLTLSMFPLTAAVSPLVRYLNGDNNFNQEMAPPIAT--------------LRNNLQPLVEVFEIQPIRLDGDHGGAPKNIEAIIVISRAVPRPTKGEGDLSCVINGVQTRAVWLSWGMVLC 366
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BLAST of mRNA_C-tenellus_contig7424.1.3 vs. uniprot
Match: D7G5V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V6_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.300e-6
Identity = 45/143 (31.47%), Postives = 63/143 (44.06%), Query Frame = 0 
Query:  193 ETELIFESVSGTTSNSTESGPEQAFSLVRDNAGFVFPGCLYILSLPAWT-RYPGDPTTVRVILSDDG-----------------WIADVGGTNWKAAWSHGNGATTEMRGGQFLSLSLGRSHQGDQEGRVLTLYTPDGGRTWI 317
            E     ++V G  S    SG      LVRD  GFVFPGC+Y+LS+ + + R   +   V V+L+ DG                 W   +GGTN   +W+ GN          F  + L  +       R +TL + DGGRTW+
Sbjct:   17 EVSSTIDAVGGDGSAPANSGGIGKIRLVRDPFGFVFPGCMYVLSMQSGSSRKMANSDGVSVVLNRDGTVTSTTGGERVARWFFPWKKSLGGTN-DESWASGNEVLLRFNT-DFSQVGLTATAWEVGGSRDVTLSSSDGGRTWL 157
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7424.1.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSQ9_9PHAE1.570e-3330.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5V6_ECTSI2.300e-631.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 363..384
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 52..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 72..458
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7424contigC-tenellus_contig7424:711..5902 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7424.1.3mRNA_C-tenellus_contig7424.1.3Choristocarpus tenellus KU2346mRNAC-tenellus_contig7424 393..6116 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7424.1.3 ID=prot_C-tenellus_contig7424.1.3|Name=mRNA_C-tenellus_contig7424.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=459bp
MSLRVGSSLLARRGRDATPGNACAGTMAFSPKRDFVRFQGKKQRQSMPSP
RVRCALVGLLLLAALLVLKVLKREDLRGNQPNQPQAETERGQEKGGLQPP
PGFSTGCAGIAHRDCWAGVYVSTLTGEVVLLTPEGRVLQSPGSTSSRTRG
QDILWWGAKERTLEVIAYNGHGFTLSKKGTFQHMSMPAATIEETELIFES
VSGTTSNSTESGPEQAFSLVRDNAGFVFPGCLYILSLPAWTRYPGDPTTV
RVILSDDGWIADVGGTNWKAAWSHGNGATTEMRGGQFLSLSLGRSHQGDQ
EGRVLTLYTPDGGRTWIESTPPGQGAGIGKPVAVLSLEAPANVTLFPASP
PIEPLLKHLSGYDGAREEPVESGGRGDAGNNRGKTKVGGKLEEIVSVFEG
QPLLLGRPAPGSLTRSGFLVVISRAVPRPKEKKEDLLCWFDGVGASAIWI
SWSMVLCR*
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