mRNA_C-tenellus_contig7400.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7400.4.1
Unique NamemRNA_C-tenellus_contig7400.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7400.4.1 vs. uniprot
Match: D7FS57_ECTSI (Chloride channel protein EriC n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS57_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.140e-29
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:   28 IPQSINDEGRFLLLASLVGLITGTAVTVFKTMIGSVKRYSYGDLVGIFPVKFAPL-VAALVPVLGGAGVVLLKHLMALKSFGPGLSGLTEEVDRQTPWNPARWVFAT 345
            +P+   +E RFL++A+L+G+ITGTAVT+FKT+IG+VK++SY DL+G  P   A   + A +PVLG  GVV L   + LKS+GPGL GLTEEVDRQ PW P R +  T
Sbjct:  128 LPEDTAEESRFLIMAALLGVITGTAVTIFKTLIGAVKKFSYDDLIGRVPPGAASTCIGAFIPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDRQVPWRPRRTLGKT 234
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7400.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS57_ECTSI4.140e-2955.14Chloride channel protein EriC n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7400contigC-tenellus_contig7400:5302..6104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FS57
PFAMsCBS,TrkA_C,Voltage_CLC
Model size360
Max annot lvl2759|Eukaryota
KEGG rclassRC00311,RC00313
KEGG koko:K01637
KEGG ReactionR00479
KEGG Pathwayko00630,ko01100,ko01110,ko01120,ko01200,map00630,map01100,map01110,map01120,map01200
KEGG ModuleM00012
Hectar predicted targeting categorysignal anchor
Exons2
Evalue6.79e-30
EggNOG OGsCOG0038@1|root,KOG0475@2759|Eukaryota
EC4.1.3.1
Descriptionvoltage-gated chloride channel activity
Cds size360
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790034.8864634-CDS-C-tenellus_contig7400:5301..54041680790034.8864634-CDS-C-tenellus_contig7400:5301..5404Choristocarpus tenellus KU2346CDSC-tenellus_contig7400 5302..5404 +
1680790034.8976073-CDS-C-tenellus_contig7400:5847..61041680790034.8976073-CDS-C-tenellus_contig7400:5847..6104Choristocarpus tenellus KU2346CDSC-tenellus_contig7400 5848..6104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7400.4.1prot_C-tenellus_contig7400.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7400 5302..6104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7400.4.1

>prot_C-tenellus_contig7400.4.1 ID=prot_C-tenellus_contig7400.4.1|Name=mRNA_C-tenellus_contig7400.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp
MLWKLKNPSIPQSINDEGRFLLLASLVGLITGTAVTVFKTMIGSVKRYSY
GDLVGIFPVKFAPLVAALVPVLGGAGVVLLKHLMALKSFGPGLSGLTEEV
DRQTPWNPARWVFATHETM*
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mRNA from alignment at C-tenellus_contig7400:5302..6104+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7400.4.1 ID=mRNA_C-tenellus_contig7400.4.1|Name=mRNA_C-tenellus_contig7400.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=803bp|location=Sequence derived from alignment at C-tenellus_contig7400:5302..6104+ (Choristocarpus tenellus KU2346)
ATGCTGTGGAAGCTTAAGAATCCTTCAATTCCTCAGAGTATTAACGACGA
GGGGAGATTCCTGTTACTCGCCTCTTTGGTGGGACTCATCACAGGAACCG
CAGGTAAGGTGACCCCCCCCTCTCACCATCAATTGGATGGCGTACTTGCC
TCGGACCAGCTATTTCAGCAGATAGGTAGAAGATGAAACTTGTTAGATCC
ATCGAGTTCTGTCGGCGTGCATTGTCTTACTCAAATCGTGCAGCCTACAC
TATTCCATTTAGCAGACTCGTCACTAGGCTTGCATGATGTGGGTTCATTT
TTCCATCGCAATTGGGTGACGAGCTCGCCTGATGAGACTTTCGAGTATGC
CGACACGAATAGATGGTGTTGGCAACTGCAAGTAAGGTACATACGCAGGT
CTTGACCCACCACTCTCACTCCCATGCATTTTGACATCGCCTCACTCAAC
ATGAATGCGCCCCCATCACCAGCACCTCCTCTATCACAGAGGTGGCAACA
GTCTCACATCCCCTATCCATTTCTCCACTCACCTTACAAACTACAGTCAC
TGTGTTTAAGACGATGATAGGGTCTGTGAAGAGGTACTCGTACGGCGACC
TTGTCGGTATTTTTCCAGTTAAATTCGCGCCCTTGGTGGCAGCCTTAGTG
CCAGTTCTGGGGGGTGCCGGAGTGGTGCTACTGAAGCACTTGATGGCACT
AAAGTCGTTTGGACCAGGCCTCAGCGGTCTCACAGAGGAGGTTGACAGGC
AGACCCCGTGGAACCCAGCTAGGTGGGTGTTTGCGACACATGAAACAATG
TAA
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Coding sequence (CDS) from alignment at C-tenellus_contig7400:5302..6104+

>mRNA_C-tenellus_contig7400.4.1 ID=mRNA_C-tenellus_contig7400.4.1|Name=mRNA_C-tenellus_contig7400.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=360bp|location=Sequence derived from alignment at C-tenellus_contig7400:5302..6104+ (Choristocarpus tenellus KU2346)
ATGCTGTGGAAGCTTAAGAATCCTTCAATTCCTCAGAGTATTAACGACGA
GGGGAGATTCCTGTTACTCGCCTCTTTGGTGGGACTCATCACAGGAACCG
CAGTCACTGTGTTTAAGACGATGATAGGGTCTGTGAAGAGGTACTCGTAC
GGCGACCTTGTCGGTATTTTTCCAGTTAAATTCGCGCCCTTGGTGGCAGC
CTTAGTGCCAGTTCTGGGGGGTGCCGGAGTGGTGCTACTGAAGCACTTGA
TGGCACTAAAGTCGTTTGGACCAGGCCTCAGCGGTCTCACAGAGGAGGTT
GACAGGCAGACCCCGTGGAACCCAGCTAGGTGGGTGTTTGCGACACATGA
AACAATGTAA
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