mRNA_C-tenellus_contig7394.1.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7394.1.3
Unique NamemRNA_C-tenellus_contig7394.1.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7394.1.3 vs. uniprot
Match: A0A6H5L051_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L051_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.080e-20
Identity = 63/142 (44.37%), Postives = 90/142 (63.38%), Query Frame = 1 
Query:    1 SRMRYAYSMRVKCSTRLRGSRENVRGKINRVKQKLRSNDDQELIKKLKGFIMYLRQQDPQFRTEDAMRETLAQGMTAKAAKLKSRLEDIKENPFRNFPDDEEED-----------------SEDMSWGFDKSFYKDEEPGDN 375
            +R+R     R +    +RG+RE +   +N ++  +RS D+ EL+++LK FIM+LR++DPQF T+DAM E L QG+ + AAKLK +LEDIK+NPFR+   D  ED                 SEDMSWGFD++F+ +E  GDN
Sbjct:   72 ARVRVQRDRRTRLFESIRGNREKIGRAMNSLRDAMRSGDE-ELVERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEDIKQNPFRHSLLDVSEDGXXXXXXXXXXXDGGDTSEDMSWGFDQTFFGEE--GDN 210
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BLAST of mRNA_C-tenellus_contig7394.1.3 vs. uniprot
Match: D8LDR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR1_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.800e-18
Identity = 58/140 (41.43%), Postives = 87/140 (62.14%), Query Frame = 1 
Query:    1 SRMRYAYSMRVKCSTRLRGSRENVRGKINRVKQKLRSNDDQELIKKLKGFIMYLRQQDPQFRTEDAMRETLAQGMTAKAAKLKSRLEDIKENPFRN---------------FPDDEEEDSEDMSWGFDKSFYKDEEPGDN 375
            +R+R     R +    +RG+RE +   +N ++  +R+ D+ EL ++LK FIM+LR++DPQF T+DAM E L QG+ + AAKLK +LE+I +NPFR+                  D  + SEDMSWGFD++F+ +E  GDN
Sbjct:   27 ARVRVERDRRTRLFESIRGNREKIGRAMNSLRDAMRTGDE-ELAERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEEINQNPFRHSLLDVSAEDGXXXXXXXXDGGDTSEDMSWGFDQTFFGEE--GDN 163
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7394.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L051_9PHAE1.080e-2044.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDR1_ECTSI1.800e-1841.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7394contigC-tenellus_contig7394:2878..5507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1556
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001650.1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790033.8651526-UTR-C-tenellus_contig7394:2877..28831680790033.8651526-UTR-C-tenellus_contig7394:2877..2883Choristocarpus tenellus KU2346UTRC-tenellus_contig7394 2878..2883 +
1680790033.9228954-UTR-C-tenellus_contig7394:4353..55071680790033.9228954-UTR-C-tenellus_contig7394:4353..5507Choristocarpus tenellus KU2346UTRC-tenellus_contig7394 4354..5507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790033.877395-CDS-C-tenellus_contig7394:2883..29851680790033.877395-CDS-C-tenellus_contig7394:2883..2985Choristocarpus tenellus KU2346CDSC-tenellus_contig7394 2884..2985 +
1680790033.8960276-CDS-C-tenellus_contig7394:3766..39011680790033.8960276-CDS-C-tenellus_contig7394:3766..3901Choristocarpus tenellus KU2346CDSC-tenellus_contig7394 3767..3901 +
1680790033.9115233-CDS-C-tenellus_contig7394:4194..43531680790033.9115233-CDS-C-tenellus_contig7394:4194..4353Choristocarpus tenellus KU2346CDSC-tenellus_contig7394 4195..4353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7394.1.3prot_C-tenellus_contig7394.1.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7394 2884..4353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7394.1.3

>prot_C-tenellus_contig7394.1.3 ID=prot_C-tenellus_contig7394.1.3|Name=mRNA_C-tenellus_contig7394.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=132bp
MRYAYSMRVKCSTRLRGSRENVRGKINRVKQKLRSNDDQELIKKLKGFIM
YLRQQDPQFRTEDAMRETLAQGMTAKAAKLKSRLEDIKENPFRNFPDDEE
EDSEDMSWGFDKSFYKDEEPGDNDNGDWNEI*
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mRNA from alignment at C-tenellus_contig7394:2878..5507+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7394.1.3 ID=mRNA_C-tenellus_contig7394.1.3|Name=mRNA_C-tenellus_contig7394.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2630bp|location=Sequence derived from alignment at C-tenellus_contig7394:2878..5507+ (Choristocarpus tenellus KU2346)
TCCCGCATGAGATACGCCTATAGTATGCGCGTGAAATGCTCAACGAGGTT
GCGAGGGAGTCGGGAGAACGTTCGCGGGAAAATAAATCGGGTAAAGCAAA
AGCTCCGGGTTGCAATTGTGAGCAGAAGAGGGTGGTAGGGGTCGGGAGAG
TAGCATAAATACTGACTGAGTTTAGGAGACTTCACCATAGTTTTCTTCTT
GGAAATGGATGCTGCAATATTACTTTCGATCGCTCTGGTTTTTGTCCTTG
AGAACTTCGCGAAGGCTGTGTTCTGGATCCGGGCCTTACACCACAAGTGA
AGTATGGAGGCATCACTGGACCTTTTGATACGACAACGGAGCTATACATT
TTGCACTGGGAAGCACCAGGGACGATCGATGGAACAAGAGGATTTTGAAA
AAAATCGTATTCGACTGTCCTAACTGACGAATACATCCTTGTACCACGCG
CTGGATGAAGCGAATCAATCCTCTACTCAGACTCGACTTTCAAATGCCGA
ACCCACACCCCTGAATAACTAACTGCCTGATAGTTGGAAGGCGGTTTTCT
GATGCCATTTAACCACATTGAACAAGATTGATCTTTCGAGCTCGATAAAT
GAAGCCAGAAACAAACTGAATAAACTCCCATATGAGAATGATACCCTCCC
CTGGGTGGATGAACTTTCGTATGATTCACAGTTCCTGCGGGCATGACCTC
CTGACATGAGCATATCCTACCAAGTCATCTCCTGCGCCTTACACACGCCC
CACACACCCTGCCCCAACCTAACCAAGAACTACGTGCAGTCACATTAGTT
ACTCCTCTCCATGATCGTTTAGCCCTAACCATATAATATCCATTTCCCCT
TGTGATACTGAAATATATCCTCTTTTGAGGATGGTAAAGTCCAATGATGA
CCAGGAATTAATAAAGAAGCTGAAGGGCTTCATCATGTACCTTCGCCAGC
AGGATCCTCAGTTCCGTACAGAGGATGCAATGCGTGAGACCCTTGCACAG
GGTATGACAGCAAAGGCAGCTAAGGTGTACCTTGCGAAATGGTTGCCTAT
CCAGCTTACCGATATTTGTATGTTTGTGGAAACACTCTTTCGACCAGAAG
GGATAAGGCCTTTGCGAGTATCCATCGAATGACCTCATCTACTGTGTAAC
TGCATTCAACACACACTACAGCTAATTAGAATCAAGACAAAAACCTTCGA
ACTACACAACTCAGCCACACTCTTATCCTTTTACCACAGAGTCTTACCCT
CCCCCTTCCACCTCCCCCTTCCTACAATGCTGTTGTGTATTGATGTCATA
CCGTACCTTGGTGGAAGCTGAAATCCAGGCTGGAAGACATCAAAGAGAAC
CCCTTTCGTAACTTTCCAGATGATGAGGAGGAAGACTCCGAGGACATGAG
CTGGGGCTTCGATAAATCGTTTTACAAAGATGAGGAACCTGGTGATAATG
ACAATGGGGATTGGAACGAAATCTAAAAAGAAGCAGAAAGGTTACCACCA
CACACCTACAACTCCCGCCCACAGTTGTTAGAGGAGACTCGATCAAGATC
ACTAGGTGTAAGCAAGGCCATCAGAAGAACAGAGCAGTGTTTGAATTGAC
CTTCATGGGTGATACTTCAGTACTACTTCGATCCTCCTTGGTATATGGTG
TTCCAATAAATGCCTCCTACTTCGAAGTATTAAAAGTGCAGTGGTTTCTG
TTCATGTACAAAAATGCCAAGTATTTCGAGTTTTCTAGGTGTAAGAGATA
TCCTTAGATGTCATTGCTCTGAGTCGTATTCTACTACGTATATAGCCCAA
TCAACTGACCTCAGTGTTGCCCAACTGGGATTTGGGGGAGAGACCTCTAC
CCCCATCATCCAGCAGCAAATAGATTTGTTCAATCCATGCATTGAGAAAG
ACTGCAGTTGACTTCCTTCACTTCAAAAGAAGCACCGACACAGGGTTGGA
TGTAGATCAAGTAGATGTTCGAAGACAGTACAACCCTTGGTGCTGCCATA
TCCACTGCCCCAGAAATTGTGAAGTTGGTTTTATCCAATATGTGCACAGG
GGTGTCGACCACTCAGTTGAAAGGGGGTGGAGAGTAGGCAGGGAGGAGGT
TGTACAATACGTCCACAAGACAGATTTAAGTTTTGGCCAAAAGAATCTTC
TTTTGATGCAGATGGTGGAGGCTGTCAAGGAGGACCTCAGCCATTACCAC
CAGTTGGAAAGTTTCTGCCAAGAATCTAAGGAGGATAAGACAGTACCAAC
TTGCTGAACAGTGATCAAAGTAGGTGGATTGAACTAGAAAACAAGCTGGT
GAACAGTAGATTAGAAAATAATATGGACCTGGTGAGGGTCAGTGAAGTCA
GGACAGACAAGTACCAACTAATTTAGCATTCATGTGAAGGTGAAGCAAGC
ACTTTCATGCTTGTAGTACAGTTGGGTTCGTCAATATGACTCAGAGGCCA
TGCTATATCTGAGGCTTGAATGTGTGTGGGGGCGGTTCAATAATGTGTAG
TGTGAAAAATGACTCTACCGTGACTGGGAGGCGCTTCAATCGACAAATCA
TCATCGCATCACAGAAACTTTAATGGTCAAAGAGTTTTTAGTTGTAAAAC
ATCAGAGTGTACCTGCTCACTCGAATTGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig7394:2878..5507+

>mRNA_C-tenellus_contig7394.1.3 ID=mRNA_C-tenellus_contig7394.1.3|Name=mRNA_C-tenellus_contig7394.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=396bp|location=Sequence derived from alignment at C-tenellus_contig7394:2878..5507+ (Choristocarpus tenellus KU2346)
ATGAGATACGCCTATAGTATGCGCGTGAAATGCTCAACGAGGTTGCGAGG
GAGTCGGGAGAACGTTCGCGGGAAAATAAATCGGGTAAAGCAAAAGCTCC
GGTCCAATGATGACCAGGAATTAATAAAGAAGCTGAAGGGCTTCATCATG
TACCTTCGCCAGCAGGATCCTCAGTTCCGTACAGAGGATGCAATGCGTGA
GACCCTTGCACAGGGTATGACAGCAAAGGCAGCTAAGCTGAAATCCAGGC
TGGAAGACATCAAAGAGAACCCCTTTCGTAACTTTCCAGATGATGAGGAG
GAAGACTCCGAGGACATGAGCTGGGGCTTCGATAAATCGTTTTACAAAGA
TGAGGAACCTGGTGATAATGACAATGGGGATTGGAACGAAATCTAA
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