mRNA_C-tenellus_contig7345.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7345.1.1
Unique NamemRNA_C-tenellus_contig7345.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7345.1.1 vs. uniprot
Match: D7FQJ2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ2_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 2.240e-45
Identity = 79/135 (58.52%), Postives = 103/135 (76.30%), Query Frame = 1 
Query:    1 MRKKEELIIVDTLLEDGKNEGDLPHLCLDKTLLENSGHSILDPKGLEDVLQLLRKTKRKINRLSLSFNKTEARGVGQFLKADRNVTEVNILCEKVSKESMYSISLALQSNNRVRKLLLGGKELEVEAAQGLGSML 405
            ++KK ELI+VDTLLE+G N+GDLPHLCLDKTLL  SGH  L PK LEDVL  +R+TKRK+N+LS+ FN T  +G+G F+  D +V EV +LCE +S +S+ S++ AL++N  V KLLLGGKEL+  AA  L S+L
Sbjct:   23 IKKKGELIVVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTLGPKDLEDVLTSVRRTKRKLNKLSVMFNGTGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETNKTVEKLLLGGKELQEGAAAALESVL 157
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7345.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQJ2_ECTSI2.240e-4558.52Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7345contigC-tenellus_contig7345:1630..3104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size405
Hectar predicted targeting categoryother localisation
Exons3
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790030.961378-CDS-C-tenellus_contig7345:1629..17731680790030.961378-CDS-C-tenellus_contig7345:1629..1773Choristocarpus tenellus KU2346CDSC-tenellus_contig7345 1630..1773 -
1680790030.9740047-CDS-C-tenellus_contig7345:2615..27601680790030.9740047-CDS-C-tenellus_contig7345:2615..2760Choristocarpus tenellus KU2346CDSC-tenellus_contig7345 2616..2760 -
1680790030.9869246-CDS-C-tenellus_contig7345:2988..31041680790030.9869246-CDS-C-tenellus_contig7345:2988..3104Choristocarpus tenellus KU2346CDSC-tenellus_contig7345 2989..3104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7345.1.1prot_C-tenellus_contig7345.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7345 1630..3104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7345.1.1

>prot_C-tenellus_contig7345.1.1 ID=prot_C-tenellus_contig7345.1.1|Name=mRNA_C-tenellus_contig7345.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=135bp
MRKKEELIIVDTLLEDGKNEGDLPHLCLDKTLLENSGHSILDPKGLEDVL
QLLRKTKRKINRLSLSFNKTEARGVGQFLKADRNVTEVNILCEKVSKESM
YSISLALQSNNRVRKLLLGGKELEVEAAQGLGSML
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mRNA from alignment at C-tenellus_contig7345:1630..3104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7345.1.1 ID=mRNA_C-tenellus_contig7345.1.1|Name=mRNA_C-tenellus_contig7345.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1475bp|location=Sequence derived from alignment at C-tenellus_contig7345:1630..3104- (Choristocarpus tenellus KU2346)
ATGAGGAAAAAGGAGGAGCTCATTATTGTGGATACGCTCCTGGAAGACGG
GAAAAACGAAGGAGACTTGCCACACCTGTGTTTGGACAAGACTCTCCTGG
AGAACTCGGGTCACAGGTGTACACCACCACGCTCATGTCGCGGCTCCGTA
CTTCTGACACAATTGGCCACATACAAAATCACATCAGTGTATGTCTCAAT
GAATATTCCTGGGCTATCGATAGGAAGGATAATGAATGATCAACGGAACC
TGGTGATCACATACTCTTTGATCACAGGGTACTCCAACAACCATAACGCA
ACATAATTTCCACCAAAATATCACCACTGCACATTCCCCAATAGTATATT
AGATCCCAAGGGTCTGGAGGATGTTCTGCAGCTACTACGAAAGACCAAGA
GAAAGATTAATCGACTTTCTCTCTCATTTAACAAGACAGAAGCCAGGGGT
GTGGGGCAGTTTTTGAAGGCGGACAGGAACGTGACGGAGGTGATTAATTT
CTTTATAGACTCCTTATCAGCTCTTCATATTCTATGTATAAGCGCGTATC
CGTGTCTATTTTATTTTATAGGCTTCAGCAGGACATTATATTTCAGGACT
GGATACAACTCCTTCCGCATCACCTTGTCCTGGCAGTAACCTTTGAGCAC
GGTCAAAGCTTGGAGAACAGTGCCAAGCATTTTCAAGATCTTTGGATCAG
TGGGTCATAGTATCCTAGAGGGAAGGATGTTCAGTCCAGGTTATCCGTTC
GGATCTTAATGACGTGTTGTAAGATACCCCAGTTTGATGCCCGTTTTATG
AATGATGTTCCTTTGAACTTTGTGCAGCCTAGAGAATTGAAACGGAAGGT
GCGTTCAGATGAAGAAAATTGCCCTTTCGTTCGACACATTTACTCATATA
ACATAGAAATCACTACAGTATCAAACAGGCCCCCAATGGATGTCTGGCCC
GCCCTCTAAGATACTATGGGTCAGTACACAAATCTCTCATTACAGTCAAA
ACCGACCTACAAAAGACTCTGTGGTTATGGTCAGCGCCTCTGTACAGGAG
TCCATTTCTAGCCATCACAATTTAGGAACTAGAGCTCTAGGATGTGAGTG
GGAAAATGTCCCAATTTCCCATTAAAGAAAACAAAATGTAGATATATTGT
AATTTGAAGCAAAATCGTAGTAATTGATTAAGTAGTTTGAAATACTCAAG
TGGATGCACCTATCTCTGTCGAGCTCTAAATGTCAAATAGTCGAACTGAT
ATAGCAATAGGTTTGTTATATATATTACCAGCCTTACCTGTGATATGCCT
GTACTATGCCACATACGGAAAAATTTCATAGGTTAACATACTCTGCGAGA
AAGTATCAAAAGAGTCGATGTATTCAATATCGCTCGCCCTCCAAAGCAAC
AACAGAGTCCGGAAACTATTGCTAGGAGGGAAAGAGCTCGAGGTGGAAGC
TGCCCAGGGCCTGGGATCTATGCTT
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Coding sequence (CDS) from alignment at C-tenellus_contig7345:1630..3104-

>mRNA_C-tenellus_contig7345.1.1 ID=mRNA_C-tenellus_contig7345.1.1|Name=mRNA_C-tenellus_contig7345.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=405bp|location=Sequence derived from alignment at C-tenellus_contig7345:1630..3104- (Choristocarpus tenellus KU2346)
ATGAGGAAAAAGGAGGAGCTCATTATTGTGGATACGCTCCTGGAAGACGG
GAAAAACGAAGGAGACTTGCCACACCTGTGTTTGGACAAGACTCTCCTGG
AGAACTCGGGTCACAGTATATTAGATCCCAAGGGTCTGGAGGATGTTCTG
CAGCTACTACGAAAGACCAAGAGAAAGATTAATCGACTTTCTCTCTCATT
TAACAAGACAGAAGCCAGGGGTGTGGGGCAGTTTTTGAAGGCGGACAGGA
ACGTGACGGAGGTTAACATACTCTGCGAGAAAGTATCAAAAGAGTCGATG
TATTCAATATCGCTCGCCCTCCAAAGCAACAACAGAGTCCGGAAACTATT
GCTAGGAGGGAAAGAGCTCGAGGTGGAAGCTGCCCAGGGCCTGGGATCTA
TGCTT
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