prot_C-tenellus_contig734.3.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig734.3.1
Unique Nameprot_C-tenellus_contig734.3.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length204
Homology
[Close]
BLAST of mRNA_C-tenellus_contig734.3.1 vs. uniprot
Match: A0A835YUT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 8.190e-13
Identity = 64/206 (31.07%), Postives = 76/206 (36.89%), Query Frame = 0 
Query:    1 FRTPWRQAPQNAGHHHNIAPLLLAQGDVKGAIHHYRRAIELNPHCNSSKNDLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIAVRRGPS--VQGVYQREDTSVFRLLAVQLMACGGPERPHSHAFMDSYRALSGKAVTLANSVRTEEIL 204
            FR   RQAP NA +H N+APLL+++G +  AIHHYRRAIELNP   SSKND+                                                                                     +IAV RGP   V       D  V R LAVQL      +   +HA MD+ RAL GK V L NS  T EI+
Sbjct:   26 FRHKLRQAPDNASYHRNLAPLLVSEGQLTKAIHHYRRAIELNPADCSSKNDIGVCLWQLGKWEAALAAFVQVTRERPDFTAAHVNMSAVYFGRGMLVQALQHARQAVHLAPMDARAHRNLAKVLDATGDSTCAMAHRQIAVLRGPGSRVPPKPVAADIQVHRALAVQLHYHQQGDVEGAHACMDAARALEGKHVVLPNSETTWEIV 231
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig734.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YUT1_9STRA8.190e-1331.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 12..45
e-value: 0.012
score: 24.8
coord: 114..147
e-value: 200.0
score: 3.5
coord: 80..113
e-value: 15.0
score: 13.4
coord: 46..79
e-value: 0.16
score: 21.0
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 114..147
score: 5.104
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 80..113
score: 7.523
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 12..45
score: 9.145
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 46..79
score: 7.759
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 5..190
e-value: 1.4E-29
score: 105.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 9..152
NoneNo IPR availablePFAMPF13432TPR_16coord: 18..72
e-value: 2.1E-8
score: 34.6
NoneNo IPR availablePANTHERPTHR44809FAMILY NOT NAMEDcoord: 1..146
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..147
score: 26.036

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig734contigC-tenellus_contig734:1058..1815 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig734.3.1mRNA_C-tenellus_contig734.3.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig734 1058..1815 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig734.3.1 ID=prot_C-tenellus_contig734.3.1|Name=mRNA_C-tenellus_contig734.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=204bp
FRTPWRQAPQNAGHHHNIAPLLLAQGDVKGAIHHYRRAIELNPHCNSSKN
DLAVILWKKGKWEAALAALRQVIMVNPNHFEGHLNLCAVYHSKAHLELAA
KHARKAVHLNPSDPRGHRALGQVLDEMGNSTESLHHRKIAVRRGPSVQGV
YQREDTSVFRLLAVQLMACGGPERPHSHAFMDSYRALSGKAVTLANSVRT
EEIL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom