mRNA_C-tenellus_contig7318.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7318.1.1
Unique NamemRNA_C-tenellus_contig7318.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7318.1.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 6.850e-52
Identity = 83/109 (76.15%), Postives = 95/109 (87.16%), Query Frame = 1
Query:    7 FSGDIVLNRCDPWWLQCVGGGVRHHLYPFHVSGGLLSTPSLASALYLLMSRFVASQYEQVCFVFSMVEGCVTDLPLSKEETGILTWLGHLKHDHHPDAVACRLRINLAS 333
            FSG++VLNRCD WWL+CVG G RHHLYP HVSG LLSTPSL++ALYLL+SRFVA QYEQ    FSMVEGCVTDLPL KEE G L WLGHL+HDHHPDAV+CRL+++LA+
Sbjct: 2176 FSGEVVLNRCDSWWLRCVGDGARHHLYPVHVSGCLLSTPSLSAALYLLVSRFVAGQYEQA---FSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAVSCRLKLSLAA 2281          
BLAST of mRNA_C-tenellus_contig7318.1.1 vs. uniprot
Match: A0A835Z7Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.740e-33
Identity = 65/105 (61.90%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   10 SGDIVLNRCDPWWLQCVGGGVRHHLYPFHVSGGLLSTPSLASALYLLMSRFVASQYEQVCFVFSMVEGCVTDLPLSKEETGILTWLGHLKHDHHPDAVACRLRIN 324
            + D+V NR D  WL  +G  VRH+LYP H S  +LSTPSLA+ALYLL+ RF+A QY  V   FSMVE CVTDL LS EE  I  WLG L+ DH PDAVACRLRI+
Sbjct: 2934 NDDVVFNRGDARWLTALGNDVRHYLYPVHPSETMLSTPSLAAALYLLLMRFMARQYADV---FSMVESCVTDLKLSPEEAQIFAWLGSLRGDHQPDAVACRLRIS 3035          
BLAST of mRNA_C-tenellus_contig7318.1.1 vs. uniprot
Match: A0A2R5FYY4_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.640e-23
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 MAFSGDIVLNRCDPWWLQCVGGGVRHHLYPFHVSGGLLSTPSLASALYLLMSRFVASQYEQVCFVFSMVEGCVTDLPLSKEETGILTWLGHLKHDHHPDAVACRLRINLAS 333
            M F+ ++VLNR  P W   +G  VRH+LY  H+S   L TP+L+SALYL + RF+A +Y+     F + + CVTD PL+ EE  IL  LG L  D HPDA ACRL+++L +
Sbjct: 2042 MIFATELVLNRTSPEWNANLGD-VRHYLYSVHLSKMFLFTPTLSSALYLFLLRFMARRYD---LAFRLADSCVTDTPLTAEEDQILDLLGSLNFDMHPDAHACRLKLSLVT 2148          
BLAST of mRNA_C-tenellus_contig7318.1.1 vs. uniprot
Match: A0A7S1NNJ3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NNJ3_9EUGL)

HSP 1 Score: 96.3 bits (238), Expect = 6.900e-21
Identity = 49/106 (46.23%), Postives = 70/106 (66.04%), Query Frame = 1
Query:   16 DIVLNRCDPWWLQCVGGGVRHHLYPFHVSGGLLSTPSLASALYLLMSRFVASQYEQVCFVFSMVEGCVTDLPLSKEETGILTWLGHLKHDHHPDAVACRLRINLAS 333
            D+VL+R +  W++ +G   RH++YP H     L TP+LASALYLL+ RF++ QY  V   F MV+ CVTD+ ++ +E  I   L  L  D HPDA ACRL+++LA+
Sbjct:  135 DVVLDRSNLEWIEKLGDQ-RHYIYPIHACKAFLFTPTLASALYLLLLRFISRQYAAV---FCMVDSCVTDMSMNDDEYQIWDQLQFLNGDTHPDAHACRLKLSLAT 236          
BLAST of mRNA_C-tenellus_contig7318.1.1 vs. uniprot
Match: A0A7S1U856_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U856_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.700e-20
Identity = 48/109 (44.04%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    7 FSGDIVLNRCDPWWLQCVGGGVRHHLYPFHVSGGLLSTPSLASALYLLMSRFVASQYEQVCFVFSMVEGCVTDLPLSKEETGILTWLGHLKHDHHPDAVACRLRINLAS 333
            FS D++L+R +  WL+ + G  RH+++P H +   L+TP+LASALYL++ RF+A  Y+ V   F + + CV+D  L+ EE  I   L    +D HPDA ACRL+I+LA+
Sbjct:  178 FSTDLLLDRNNQAWLENMSGS-RHYVFPIHSTRLFLTTPTLASALYLMLCRFLARDYQAV---FRLADSCVSDQQLNAEEEQIFEQLEFCNYDSHPDAHACRLKISLAT 282          
BLAST of mRNA_C-tenellus_contig7318.1.1 vs. uniprot
Match: A0A7R9UG66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG66_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.570e-20
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    7 FSGDIVLNRCDPWWLQCVGGGVRHHLYPFHVSGGLLSTPSLASALYLLMSRFVASQYEQVCFVFSMVEGCVTDLPLSKEETGILTWLGHLKHDHHPDAVACRLRINLAS 333
            FS D++L+R +  WL+   G  RH++YP H S   L+TP+LASALYL++ +F+   Y  V   F + + CV+D  L+KEE  I   L    +D HPDA ACRL+I+LA+
Sbjct: 1705 FSTDLLLDRNNVRWLENTEGS-RHYVYPIHSSRLFLTTPTLASALYLMLCKFLVRDYPAV---FRLADSCVSDQRLNKEEEQIFDQLEFCSNDSHPDAHACRLKISLAT 1809          
BLAST of mRNA_C-tenellus_contig7318.1.1 vs. uniprot
Match: W7TMJ4_9STRA (EF-Hand 1, calcium-binding site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMJ4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.550e-18
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    4 AFSGDIVLNRCDPWWLQCVGGGVRHHLYPFHVSGGLLSTPSLASALYLLMSRFVASQYEQVCFVFSMVEGCVTDLPLSKEETGILTWLGHLKHDHHPDAVACRLRINLAS 333
            A   ++VL++ +  W   +  G+RH+LYP H+S   + + SLASALY+L+ +F++ QY+   F F  V  CV+D  L  EE  I   L  +  D HPDA A RL+ +LA+
Sbjct: 1616 ALDVNVVLDKSNAEWQNNMSTGMRHYLYPIHLSQAFVFSASLASALYMLLFKFMSRQYD---FAFRFVSSCVSDTELLPEEAQIFNMLSSVNIDFHPDAHAVRLKFSLAT 1722          
BLAST of mRNA_C-tenellus_contig7318.1.1 vs. uniprot
Match: A0A7S0NBU9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0NBU9_9CRYP)

HSP 1 Score: 85.5 bits (210), Expect = 4.010e-17
Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    7 FSGDIVLNRCDPWWLQCVGGGVRHHLYPFHVSGGLLSTPSLASALYLLMSRFVASQYEQVCFVFSMVEGCVTDLPLSKEETGILTWLGHLKHDHHPDAVACRLRINLAS 333
            F   ++ +R D  W+  +   V H+LY  H+S      PSLAS LY+L+ RF A +Y  +   F +V  CV+D+ L+KEE  I   L   + DHHPDA ACRL+I++ +
Sbjct:  174 FPSALLFDRRDSKWISNLS--VPHYLYQIHISRRFFIMPSLASMLYMLLLRFHAREYAGI---FKIVNSCVSDVELTKEEKQIWDLLEWTRFDHHPDATACRLKISIVT 277          
BLAST of mRNA_C-tenellus_contig7318.1.1 vs. uniprot
Match: A0A7S0MQI4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MQI4_9CRYP)

HSP 1 Score: 84.0 bits (206), Expect = 1.460e-16
Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    7 FSGDIVLNRCDPWWLQCVGGGVRHHLYPFHVSGGLLSTPSLASALYLLMSRFVASQYEQVCFVFSMVEGCVTDLPLSKEETGILTWLGHLKHDHHPDAVACRLRINLAS 333
            F   ++L+R DP WL  +   V H+LY  H+S   L  PSLAS LY+L+ RF A QY  +   F +V  CV+D  L+KEE  I   L     D HPDA A RL+I++A+
Sbjct:  623 FPSAMLLDRRDPAWLANLP--VPHYLYQIHISQRFLLMPSLASMLYILLLRFHARQYADI---FKIVNSCVSDTELTKEEKQIWDLLEWTNLDSHPDASASRLKISIAT 726          
BLAST of mRNA_C-tenellus_contig7318.1.1 vs. uniprot
Match: A0A0M0JIY9_9EUKA (Ef hand family protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JIY9_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 2.740e-16
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   16 DIVLNRCDPWWLQCVGGGVRHHLYPFHVSGGLLSTPSLASALYLLMSRFVASQYEQVCFVFSMVEGCVTDLPLSKEETGILTWLGHLKHDHHPDAVACRLRINL 327
            ++ L   +  WL  +G   RH+LYP H+S   L  P+LA+ALYLLM R +A QY+ V  + S+   CV D PLS EE  I+  L     D HPDA ACRL ++L
Sbjct:    1 ELELECGNEVWLGNLGA-TRHYLYPVHLSERCLFAPTLAAALYLLMLRLLARQYDAVVAMASL---CVCDGPLSPEERQIVRLLAQCNADRHPDAHACRLHVSL 100          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7318.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRI4_ECTSI6.850e-5276.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z7Z7_9STRA3.740e-3361.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2R5FYY4_9STRA2.640e-2347.75Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A7S1NNJ3_9EUGL6.900e-2146.23Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1U856_9STRA1.700e-2044.04Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9UG66_9STRA4.570e-2044.95Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7TMJ4_9STRA3.550e-1840.00EF-Hand 1, calcium-binding site n=2 Tax=Monodopsid... [more]
A0A7S0NBU9_9CRYP4.010e-1740.37Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0MQI4_9CRYP1.460e-1644.04Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A0M0JIY9_9EUKA2.740e-1645.19Ef hand family protein (Fragment) n=1 Tax=Chrysoch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7318contigC-tenellus_contig7318:4449..5557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LRI4
Preferred nameENAH
PFAMsEF-hand_4,RasGEF,RasGEF_N,SH3_1,SH3_2,SH3_9,VASP_tetra,WH1
Model size333
Max annot lvl2759|Eukaryota
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.12e-52
EggNOG OGsKOG1029@1|root,KOG1029@2759|Eukaryota
Descriptionpositive regulation of caveolin-mediated endocytosis
Cds size333
COG categoryU
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790028.7050495-CDS-C-tenellus_contig7318:4448..45891680790028.7050495-CDS-C-tenellus_contig7318:4448..4589Choristocarpus tenellus KU2346CDSC-tenellus_contig7318 4449..4589 -
1680790028.7229123-CDS-C-tenellus_contig7318:5365..55571680790028.7229123-CDS-C-tenellus_contig7318:5365..5557Choristocarpus tenellus KU2346CDSC-tenellus_contig7318 5366..5557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7318.1.1prot_C-tenellus_contig7318.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7318 4449..5557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7318.1.1

>prot_C-tenellus_contig7318.1.1 ID=prot_C-tenellus_contig7318.1.1|Name=mRNA_C-tenellus_contig7318.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=111bp
MAFSGDIVLNRCDPWWLQCVGGGVRHHLYPFHVSGGLLSTPSLASALYLL
MSRFVASQYEQVCFVFSMVEGCVTDLPLSKEETGILTWLGHLKHDHHPDA
VACRLRINLAS
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mRNA from alignment at C-tenellus_contig7318:4449..5557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7318.1.1 ID=mRNA_C-tenellus_contig7318.1.1|Name=mRNA_C-tenellus_contig7318.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1109bp|location=Sequence derived from alignment at C-tenellus_contig7318:4449..5557- (Choristocarpus tenellus KU2346)
ATGGCGTTCTCCGGCGACATTGTGCTAAATCGCTGCGACCCATGGTGGTT GCAGTGTGTTGGAGGAGGCGTTCGTCATCATCTGTACCCTTTCCATGTCT CGGGGGGGCTCTTGTCAACGCCTTCGTTGGCGTCTGCACTATACCTTTTG ATGTCACGATTTGTTGCCTCGCAGTACGAGCAGGTATGTTTTGTTAGTTT TGACATGCTCTAGAGGGGCTGGGGGGGGGGGAGAGTGATTAATAAGGTGT TCAAGGTGTGGTAAATGGGGTTACAGGCATGTGTTTAGAGAGAGGNNNNN NNNNNTTGTGGGGTGGTGGCGTGTCTGTCGTCATCTTCTGCTTTGAATTT GCGGGGATAGTGATATATATGGTCTTCAAGTTGTGGTAAATGTGGTAACA GTCATGTGTTTAGAGAGAGGGGGACAAGAAAGAGAGGGGTTATGCACTTA CTAGTACCCCAATATATCCCAATATATCCTGTAAGGGAGTGAAACTGGTC AATCTTGTTGGTGTTTGGAAGAGGCTCGACTTGAGAAGGGAAGGGAAGAG GGATGGGAAGGAGGAAGCATTTTGAACATATATTTTTTTTGTATGGCATG TTAGGTGAATGGTCTTAGATATGAAATGGAGGCATTTTTTGTCTGTTAAG CTGGTTGAGGTGAGGGTTACGGCACGATGGCAATGGAGTGATTTAAAAAA TATATATATATTTATTTGTTTATATTTTCTCACTCTGTGTTTGTGTCCCA AATGTGCAGGGGCTTCCTTTGTGCAATATATTTTTTGTTTCTCTGTTGTG ATTTGATAGGGTTAGGGTTAGGGATAGGGATAGGGATGGATGATTCCGGT AGTGCATCCACTGCCATCATCAAAGGTGATGCATATCGATTGTTATTGTT ATTATTATTATTATTATTATTATTATCTTAAGCTCTTTTCTCATGACCCC GATTGTTGATCATCAAAGGTGTTCTCCATGGTGGAAGGGTGTGTGACAGA TTTGCCGCTCTCTAAGGAGGAGACGGGCATCCTGACCTGGCTTGGTCACC TCAAGCACGATCACCATCCCGATGCAGTAGCATGTCGACTACGTATCAAT CTTGCCTCT
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Coding sequence (CDS) from alignment at C-tenellus_contig7318:4449..5557-

>mRNA_C-tenellus_contig7318.1.1 ID=mRNA_C-tenellus_contig7318.1.1|Name=mRNA_C-tenellus_contig7318.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=333bp|location=Sequence derived from alignment at C-tenellus_contig7318:4449..5557- (Choristocarpus tenellus KU2346)
ATGGCGTTCTCCGGCGACATTGTGCTAAATCGCTGCGACCCATGGTGGTT
GCAGTGTGTTGGAGGAGGCGTTCGTCATCATCTGTACCCTTTCCATGTCT
CGGGGGGGCTCTTGTCAACGCCTTCGTTGGCGTCTGCACTATACCTTTTG
ATGTCACGATTTGTTGCCTCGCAGTACGAGCAGGTATGTTTTGTGTTCTC
CATGGTGGAAGGGTGTGTGACAGATTTGCCGCTCTCTAAGGAGGAGACGG
GCATCCTGACCTGGCTTGGTCACCTCAAGCACGATCACCATCCCGATGCA
GTAGCATGTCGACTACGTATCAATCTTGCCTCT
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