mRNA_C-tenellus_contig7309.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7309.1.1
Unique NamemRNA_C-tenellus_contig7309.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7309.1.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.910e-31
Identity = 62/134 (46.27%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   25 VEHLSLGTAPFSGQHTYSDVKLWIQK--------VMSEYFSSFMGEDVQPCDVFLAGTIDQGANILNALRELNVPVLTCTAHKLNASVMWALGINGTKETGKNKEGRELVRKGDTMARAFSHSAINHDALHDAQ 402
            +  + L T  F G HT +D++ WI+K        + +E+F+  MGE+VQP DVFLA T+DQG N++NA R L+V VL C AH+LN+  MWALGING+  TG+N    +L+++   +   FSHSA+N+D L D Q
Sbjct:  297 ITRVGLATRAFPGSHTAADIEPWIEKASFTTFKLLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQ 430          
BLAST of mRNA_C-tenellus_contig7309.1.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 5.670e-30
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    7 QGNFSGVEHLSLGTAPFSGQHTYSDVKLWIQKVMSEYFSSFMGEDVQPCDVFLAGTIDQGANILNALRELNVPVLTCTAHKLNASVMWALGINGTKETGKNKEGRELVRKGDTMARAFSHSAINHDALHDAQ 402
            +G    V  ++L T  F G HT  D+K WI+ +  EYF   +G  VQP DVFL  T+DQG NI+NA   L VPV+ C  H++N++V+WALGI G   T KNK   +L++K       FSHSA+N+D L + Q
Sbjct:  117 KGKTDDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKLAASVGVFSHSAVNNDMLKEIQ 248          
BLAST of mRNA_C-tenellus_contig7309.1.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 5.820e-30
Identity = 58/133 (43.61%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    4 IQGNFSGVEHLSLGTAPFSGQHTYSDVKLWIQKVMSEYFSSFMGEDVQPCDVFLAGTIDQGANILNALRELNVPVLTCTAHKLNASVMWALGINGTKETGKNKEGRELVRKGDTMARAFSHSAINHDALHDAQ 402
            ++   + V  ++L    F G HT  D+  WI+++  EYF+ FMGEDV+P DVFLA T+DQG N++NA + L VPV+ C  H++N +V+WALGI G     +NK   +L++K   +   FSHSA+N+D L + Q
Sbjct:  308 VEKGSTDVTRVALACRAFPGTHTADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR--RNKVMGDLMKKLAALVGVFSHSAVNNDKLKELQ 438          
BLAST of mRNA_C-tenellus_contig7309.1.1 vs. uniprot
Match: D7G7X8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X8_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 4.010e-29
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   31 HLSLGTAPFSGQHTYSDVKLWIQKVMSEYFSSFMGEDVQPCDVFLAGTIDQGANILNALRELNVPVLTCTAHKLNASVMWALGINGTKETGKNKEGRELVRKGDTMARAFSHSAINHDAL 390
            HLSL T  F GQHT + +K W++++ +  F S +   V P DV++A T+DQG N++NA + L +P + C  H++++SVMW +G++G+  T KNK+GR LV +    A  FSHS  N DA 
Sbjct:   59 HLSLATKVFRGQHTQATIKTWLEQLTTGVFQSIVPA-VVPSDVYVAATVDQGLNVVNACKSLGIPTIPCLGHRIHSSVMWGIGVSGSVATQKNKKGRVLVGRCAACAGMFSHSCTNSDAF 177          
BLAST of mRNA_C-tenellus_contig7309.1.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.540e-28
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   34 LSLGTAPFSGQHTYSDVKLWIQKVMSEYFSSFMGEDVQPCDVFLAGTIDQGANILNALRELNVPVLTCTAHKLNASVMWALGINGTKETGKNKEGRELVRKGDTMARAFSHSAINHDALHDAQ 402
            ++L    F G HT  D++ WI+K+  EYFS FMGE VQP DVFLA T+DQG NI+NA   L V V+ C  H+LN +V+WALGI G      N     L++K   M   FSHSA+N+D L + Q
Sbjct:  125 IALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQ 245          
BLAST of mRNA_C-tenellus_contig7309.1.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.770e-28
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   34 LSLGTAPFSGQHTYSDVKLWIQKVMSEYFSSFMGEDVQPCDVFLAGTIDQGANILNALRELNVPVLTCTAHKLNASVMWALGINGTKETGKNKEGRELVRKGDTMARAFSHSAINHDALHDAQ 402
            ++L    F G HT  D++ WI+K+  EYFS FMGE VQP DVFLA T+DQG NI+NA   L V V+ C  H+LN +V+WALGI G      N     L++K   M   FSHSA+N+D L + Q
Sbjct:  320 IALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQ 440          
BLAST of mRNA_C-tenellus_contig7309.1.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.100e-28
Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   25 VEHLSLGTAPFSGQHTYSDVKLWIQKVMSEYFSSFMGEDVQPCDVFLAGTIDQGANILNALRELNVPVLTCTAHKLNASVMWALGINGTKETGKNKEGRELVRKGDTMARAFSHSAINHDALHDAQ 402
            V  +SL T  F G HT  D+K WI+ +  EYF+  MG  V+  DVFLA T+DQG N++NA   L VPV+ C  H++N++V+WALGI G+  T KNK  ++L      +   FSHSA+N+D L + Q
Sbjct:  126 VSRVSLATRAFPGSHTADDIKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKNKPMKKLA----ALVGVFSHSAVNNDMLKELQ 247          
BLAST of mRNA_C-tenellus_contig7309.1.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.870e-27
Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 1
Query:   25 VEHLSLGTAPFSGQHTYSDVKLWIQKVMSEYFSSFMGEDVQPCDVFLAGTIDQGANILNALRELNVPVLTCTAHKLNASVMWALGINGTKETGKNKEGRELVRKGDTMARAFSHSAINHDALHDAQ 402
            V  +SL T  F G HT  D+K WI+ +  EY +  MG  V+  DVFLA T+DQG N++NA   L VPV+ C  H++N++V+WALGI G+  T KNK  ++L      +   FSHSA+N+D L + Q
Sbjct:  126 VSRVSLATRAFPGSHTADDIKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKNKPMKKLA----ALVGVFSHSAVNNDMLKELQ 247          
BLAST of mRNA_C-tenellus_contig7309.1.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.130e-26
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  100 KVMSEYFSSFMGEDVQPCDVFLAGTIDQGANILNALRELNVPVLTCTAHKLNASVMWALGINGTKETGKNKEGRELVRKGDTMARAFSHSAINHDALHDAQ 402
            ++ +E+F+  MGE+VQP DVFLA T+DQG N++NA R L+V VL C AH+LN+  MWALGING+  TG+N    +L+++   +   FSHSA+N+D L D Q
Sbjct:    2 QLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQ 102          
BLAST of mRNA_C-tenellus_contig7309.1.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 4.240e-19
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  100 KVMSEYFSSFMGEDVQPCDVFLAGTIDQGANILNALRELNVPVLTCTAHKLNASVMWALGINGTKETGKNKEGRELVRKGDTMARAFSHSAIN 378
            ++  EYF  FMGE V+P DVFLA T+DQG N++NA   L V V+ C  H++N++V+WALGI G+  T +N +   L++K   +   FS SA+N
Sbjct:    6 QLTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKLAALVGVFSPSAVN 98          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7309.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KJ52_9PHAE1.910e-3146.27Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXV5_9PHAE5.670e-3045.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE5.820e-3043.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7X8_ECTSI4.010e-2943.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTB8_9PHAE1.540e-2848.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.770e-2848.78Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JQI6_9PHAE2.100e-2846.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE1.870e-2745.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE5.130e-2651.49Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE4.240e-1946.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7309contigC-tenellus_contig7309:948..1631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size402
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790027.4024084-CDS-C-tenellus_contig7309:947..10491680790027.4024084-CDS-C-tenellus_contig7309:947..1049Choristocarpus tenellus KU2346CDSC-tenellus_contig7309 948..1049 +
1680790027.4117393-CDS-C-tenellus_contig7309:1331..16311680790027.4117393-CDS-C-tenellus_contig7309:1331..1631Choristocarpus tenellus KU2346CDSC-tenellus_contig7309 1332..1631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7309.1.1prot_C-tenellus_contig7309.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7309 948..1631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7309.1.1

>prot_C-tenellus_contig7309.1.1 ID=prot_C-tenellus_contig7309.1.1|Name=mRNA_C-tenellus_contig7309.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=134bp
MIQGNFSGVEHLSLGTAPFSGQHTYSDVKLWIQKVMSEYFSSFMGEDVQP
CDVFLAGTIDQGANILNALRELNVPVLTCTAHKLNASVMWALGINGTKET
GKNKEGRELVRKGDTMARAFSHSAINHDALHDAQ
back to top

mRNA from alignment at C-tenellus_contig7309:948..1631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7309.1.1 ID=mRNA_C-tenellus_contig7309.1.1|Name=mRNA_C-tenellus_contig7309.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=684bp|location=Sequence derived from alignment at C-tenellus_contig7309:948..1631+ (Choristocarpus tenellus KU2346)
ATGATTCAAGGGAACTTTTCAGGCGTTGAGCACCTTTCACTGGGAACTGC ACCTTTTTCTGGGCAGCACACTTATTCAGACGTCAAGCTATGGATCCAAA AGGTCAGTTGAAGATTGCCCTGTTTCCTGCCCCTTCATCGGTTGTACAAT TACTGAGAAGTGATTGCTCATAATTTGTGAATATGCCATTTTATTCTTAG TGAATGATTTATTCTGGTTTTGATCGTAGTGGTAGTAATCATTCTTGGAT AGCAAGGCGATAATTTGTTTATAGTCTTTCTGTTTTTCCTTGATCCAGAC AACTTATATTTTTGTATAATTTGATCTTTGATGTGTTGATCTTTATGTGT ATGGTATTTCCTGTTTACTGACTACTGTATGCAGGTTATGAGTGAGTACT TCAGCAGCTTTATGGGCGAAGACGTACAGCCATGTGACGTTTTTCTTGCA GGGACTATTGACCAGGGAGCAAACATCCTCAATGCCCTGCGTGAGCTTAA TGTACCTGTACTAACATGCACTGCACATAAGCTGAACGCTTCTGTTATGT GGGCACTTGGTATCAATGGTACCAAAGAGACAGGGAAGAACAAGGAAGGC AGGGAACTAGTGAGGAAAGGAGATACAATGGCGAGAGCATTTAGTCACTC TGCGATCAACCATGATGCCCTACACGATGCTCAA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7309:948..1631+

>mRNA_C-tenellus_contig7309.1.1 ID=mRNA_C-tenellus_contig7309.1.1|Name=mRNA_C-tenellus_contig7309.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=402bp|location=Sequence derived from alignment at C-tenellus_contig7309:948..1631+ (Choristocarpus tenellus KU2346)
ATGATTCAAGGGAACTTTTCAGGCGTTGAGCACCTTTCACTGGGAACTGC
ACCTTTTTCTGGGCAGCACACTTATTCAGACGTCAAGCTATGGATCCAAA
AGGTTATGAGTGAGTACTTCAGCAGCTTTATGGGCGAAGACGTACAGCCA
TGTGACGTTTTTCTTGCAGGGACTATTGACCAGGGAGCAAACATCCTCAA
TGCCCTGCGTGAGCTTAATGTACCTGTACTAACATGCACTGCACATAAGC
TGAACGCTTCTGTTATGTGGGCACTTGGTATCAATGGTACCAAAGAGACA
GGGAAGAACAAGGAAGGCAGGGAACTAGTGAGGAAAGGAGATACAATGGC
GAGAGCATTTAGTCACTCTGCGATCAACCATGATGCCCTACACGATGCTC
AA
back to top