mRNA_C-tenellus_contig73.12.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig73.12.1
Unique NamemRNA_C-tenellus_contig73.12.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig73.12.1 vs. uniprot
Match: A0A6H5JCV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.530e-17
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 VLWVTETEHGGEGR-ERTLLHRRVGEFDGREGDEYIPQWVRDCVMHGDFHTKEQSKIPFFLVPW 189
            +LWVTE + GG G  +RTLL +RVGEFDGREG + IP WV  CV+HG+FHTKEQ K+ FFL PW
Sbjct:  991 MLWVTEMDLGGHGGIQRTLLQKRVGEFDGREGQDAIPNWVMACVLHGEFHTKEQDKMAFFLAPW 1054
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig73.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCV2_9PHAE4.530e-1765.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig73contigC-tenellus_contig73:27564..31526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2829
Hectar predicted targeting categoryother localisation
Exons4
Cds size393
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig73.12.1prot_C-tenellus_contig73.12.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig73 28066..29188 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790026.864186-UTR-C-tenellus_contig73:27563..276531680790026.864186-UTR-C-tenellus_contig73:27563..27653Choristocarpus tenellus KU2346UTRC-tenellus_contig73 27564..27653 +
1680790026.8763587-UTR-C-tenellus_contig73:28026..280651680790026.8763587-UTR-C-tenellus_contig73:28026..28065Choristocarpus tenellus KU2346UTRC-tenellus_contig73 28027..28065 +
1680790026.9045408-UTR-C-tenellus_contig73:29188..296911680790026.9045408-UTR-C-tenellus_contig73:29188..29691Choristocarpus tenellus KU2346UTRC-tenellus_contig73 29189..29691 +
1680790026.9173398-UTR-C-tenellus_contig73:29722..315261680790026.9173398-UTR-C-tenellus_contig73:29722..31526Choristocarpus tenellus KU2346UTRC-tenellus_contig73 29723..31526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790026.885707-CDS-C-tenellus_contig73:28065..282451680790026.885707-CDS-C-tenellus_contig73:28065..28245Choristocarpus tenellus KU2346CDSC-tenellus_contig73 28066..28245 +
1680790026.8955188-CDS-C-tenellus_contig73:28975..291881680790026.8955188-CDS-C-tenellus_contig73:28975..29188Choristocarpus tenellus KU2346CDSC-tenellus_contig73 28976..29188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig73.12.1

>prot_C-tenellus_contig73.12.1 ID=prot_C-tenellus_contig73.12.1|Name=mRNA_C-tenellus_contig73.12.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=131bp
MHGDFHTKEQSKIPFFLVPWSSTSVSAMGGGESGGEQAVPSKGLPPNMRY
TAPAQMRVCKVIAYVLSHDECSQHLERRVSRNDEGAGEGSSKRAPEDTVE
VLCGDRVVEAHLYLGEEDRGDLLFGLRRLS*
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mRNA from alignment at C-tenellus_contig73:27564..31526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig73.12.1 ID=mRNA_C-tenellus_contig73.12.1|Name=mRNA_C-tenellus_contig73.12.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3963bp|location=Sequence derived from alignment at C-tenellus_contig73:27564..31526+ (Choristocarpus tenellus KU2346)
GTCTTGTGGGTGACTGAGACAGAGCATGGGGGGGAGGGCAGGGAGCGCAC
ACTGCTGCACAGGAGGGTGGGGGAGTTTGATGGGAGAGAGGTGAGTTTTG
TATCGTGTTTGTTTACCCTCTGTTGAAATCGTGTTGGTCCCCACTTTGGG
TCATGCTGAAGGGATGGATGGGAGAGGATGGAGAGGAAATGTTTGTCAGA
TGGTTAGCGATGTGTATCACTGAGTAGTGAGGACTAATTGGTAGGTTGTA
CTTTTGGGAGTAGTGGCGGTTAGGGTCCTGTGTGTATCTGCTTATTTTCA
GAATCGCTATGATACAACATCGTTGTATCTATCAAAGGTTGTCTGACTTG
CACTTGCAACTACCTCTTTGACAGAAGAAATGCCCCCCTGCCATTGCCCC
TTGCACCGCCCATACCAACCTTCTTTTTTTAACCATCTCATATTCCCTTT
GTATGTACCACAGGGTGACGAGTACATCCCTCAGTGGGTGAGGGACTGTG
TTATGCATGGTGATTTTCATACTAAAGAACAGTCCAAGATTCCCTTCTTC
CTTGTCCCATGGTCTTCAACATCTGTGTCAGCAATGGGGGGGGGTGAGAG
TGGGGGAGAGCAGGCCGTGCCATCCAAGGGCCTTCCACCAAACATGCGAT
ACACTGCCCCAGCACAGATGCGTGTGTGTAAGGTGGGTTTCTACTCCTGT
CAGGCATATTTTGTTTGACTTCAAACCTTGGAGCTTGGTGCTAGTTTTTG
TTGTGTTTTTTTTGTCAGTGTTGGGGTGAGATGATTCTTTGACTGAGGCA
TTGTTTATGTACAACCAGGTTGTTAGGTATGTCCTGACAAGCTGGAAGTA
ACTTGATCCTGCAACAATATTCATCGGATTGTTCTTACTTGGCCTCGTTG
TAAGCTTGTCAACAGGACACAAGACCCAATTACTCTGTAGCTGCATAATA
TAGACAAATGTTGCTCCCTGTGCCCTACTAGGTCATGTCATGTTGTAGTT
GCTTGACTGGTCACTTTGTGGATATGTTTGTGATTCATTCAGATCACACC
AAAAAAAACATGATATAAGAAATGTATCCATCACCAACAGGTCAACAGGT
TAAATGTGTGATGAATAGTGGGTGTTGGTAAGAACATCTATGTACTGCAG
TATGATAATGATAAGAATTAAAATTAGGGCAAGTTGCAGGGGAAATCCAT
CCTATTAGTTACGTGGATTAGTGTTGTGTTTGGCACTCCTATATTTTTCA
TGTGTTTGTTTATTGACCTTACCTGCTTAACATGACACACCACTTGATCG
TTGTCGCCTTGGAACTGCTTCATTGATTTATGCCAAAGTGCCTCACAAGA
CCACTTTTCCTCTAATCTCAATCTATCACATGTGTATATCCACATACATC
AACATACAATAGGTGATCGCTTATGTATTATCTCATGATGAGTGCAGCCA
ACACCTGGAGCGAAGAGTCTCCCGGAATGACGAGGGGGCTGGGGAGGGGT
CTAGCAAGCGAGCACCTGAAGACACAGTTGAGGTGCTGTGTGGGGACCGG
GTTGTGGAGGCGCATCTCTACCTGGGTGAGGAGGACAGGGGTGATCTTTT
GTTTGGCTTGAGAAGACTTTCTTAGTTTTTATCTTGTTTGAAGTATAAGC
ATTTTCTTAGTTGCAGGTGGGCACAGCTGACGATGGGTCCATTGTGAGAC
ACCACCAACTTGTAGTGAATTACATGTACAAATTGCCAAGTTGCAGTTTT
GTTGGATTCCAAAGTCTCTAAGATTTGCACTCTATATATTTTTTAAGCGC
TCTTAGTAACCGCTTTTGTATCACCTGTCCTCACATTTGCAGTAAAACTG
TATCACCAGTTGTTCCTGACGTCTACTATATGCTCCTCTGAAGTATCATC
TCATGTGCGGTTTTTGTACCATGAATAGCTACATACAATATGCCCTCTCA
TAGCGAGGCATTTTATGAAATGGTATTGGGATAGCTAGGATTGACCAGGG
TTTCATCTTGTACGTTTTTGAGCAGAGGATGTTGACTTATAGATAGCTGT
GTACAGGAGCATCTAATCTCTGTGTCACCTTCACCTTTTCCTGGCATTCC
CCCACAAGGTGTCTTTTCCACTCTTGCCTCTCTGTAGTAGCACAGTATGG
TGTGGATCAGTTTGGTGTTTCTCGTTTGCCAAGCTCTTAGCAAGAGGAGC
TGCAGGTTGTATATCAGGCATACAAGATCTGCTTGTGTGTACATAGAGCA
ACTTGACGAGTGTTATCTCTGTGTAGCCTCTCTTCGACTCATAGAGCTGA
CGTTTTGGCCTCTGCAATTGTGCTGAGTTCTGTCTCTCTGTTGTTTGCCT
GCAAAATTCATGGAAAACATTGGTTGATTTCAGCACTCTGTGGATTGTCT
TCGGGGAGATTTTTGGTGTGCAAGAGAGCACTATCTTTGTCGCAACAGTT
CAGAGCATTTTTTTACTCCAGGGTATATATAGTAGTCGGAATTGGAGGGA
TCTCAAAAGCAGTATTTTTTTTGTCTTCAGTTCAAAGAGCTACAGTACTA
AACAAACAGAAGGTGAACGACAAGTGGAACAATATCAGTCACGAAGGGAG
TGTAGAGTTGTAGTTCTATTCTGTTCATCTTACAAAATTTGCATGAAAGC
ACTGCTGGTAAGAGATCTGGGCTATCACACAGTAGTAGCAGTCATAGTGG
TTGGTTTGTTGGACGACTCAAACAGCACTACTGCACTTAATCAGTTCACC
CTGAGAGCCGATGCCCATGCATGATGGGGGGGAAATACATACTTGACTAA
GAAGGATTGACAGAGTTTTGTATGAGCACTGGGTGTGTAACTTCATGAGT
GTGTACAGCAAATATGATGCGTTATCAAAAGTGTTCAGATATGCTTGGCA
CATGCAAGGTCATATTTGTTATCCCTATTGATTATTTTTATACTTAGGCC
TGACAGTGTTTTCCCGCGTCATTATCCTCAGGTGCAATTCAACAGTACAT
TTGGAGCAGCAGTGGAACCATGGTCCTCAAATATCGGTCTCGATGACTGC
TGTTGTTGGAGTTGCAGAGTTGAAGTGCCTTTTTTTATTGAGAGGACCCC
TCTAGTTATTGCCTCCTGTTTTTAGGGATAGCATTAGCAGCCTAATTGCA
ACCCTAAGTGGGATACCTTGACAGGTAAACAGGAAGTAGGTTGGGATGGG
GGAAAGGTAGGGAATGGGGGAAACAGTGAACCAAATGGGATTAGGTTGGG
GTTGGGGCAGGCCATGTGCTGGTGACACACATGCTGCATGACCTGACTTC
TTCCTTTTTGGTACACAGGAGATCTTTGAACCAATTGTGACTGTTTGTTC
TAGGTGTTGTGAACAGAACGGTGATGCAGTCAGATTTACGGTGTGAGGTC
TTTGAGCCTGACCTGATAGTGCTCTTTTTTATACTGGATACGGTAAGATG
ATAATGAGATTTTACTTTTTACTGGAGTGCGAGCTGGTCGTGGTAGATGA
AGGAAAGGCTATACGTGATAAGGGTCACATCATTATAATTTGAAATATGA
GAGCAAACTATGATAAACAAAACCCCTCCAACAGGTATTGCTAACTCATT
AGATTTATCAATATTGTGACGGTTTTCTAGGAAATTTCCCTACACCTCTT
CATGGATCCATTGCTTTGTCCCGAGGAAGGTACAAAATTTGGTGGGAGCC
AAAATGTTGCCTGCTTGGTGGTTGCAGTGGACTGGGGCACGTAGAGTTTT
AACTGGTCAAGACGTGTGAAACCACTGATGCTGGCCAGTGATCTTCCTTT
GTACCTACCTGCTGAGGACAGGTCTTGTGAATTTTAAACTAGAAATTGTA
CTTTTGGTGGGCATTCCGTAATACTTGTGTACAAATCTGGTCACAGAATG
AATATAATATTTATTACGATCCAGCAACCTCAAGCGGAGGTAATTATTCT
GTGAATAGTGAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig73:27564..31526+

>mRNA_C-tenellus_contig73.12.1 ID=mRNA_C-tenellus_contig73.12.1|Name=mRNA_C-tenellus_contig73.12.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=393bp|location=Sequence derived from alignment at C-tenellus_contig73:27564..31526+ (Choristocarpus tenellus KU2346)
ATGCATGGTGATTTTCATACTAAAGAACAGTCCAAGATTCCCTTCTTCCT
TGTCCCATGGTCTTCAACATCTGTGTCAGCAATGGGGGGGGGTGAGAGTG
GGGGAGAGCAGGCCGTGCCATCCAAGGGCCTTCCACCAAACATGCGATAC
ACTGCCCCAGCACAGATGCGTGTGTGTAAGGTGATCGCTTATGTATTATC
TCATGATGAGTGCAGCCAACACCTGGAGCGAAGAGTCTCCCGGAATGACG
AGGGGGCTGGGGAGGGGTCTAGCAAGCGAGCACCTGAAGACACAGTTGAG
GTGCTGTGTGGGGACCGGGTTGTGGAGGCGCATCTCTACCTGGGTGAGGA
GGACAGGGGTGATCTTTTGTTTGGCTTGAGAAGACTTTCTTAG
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