mRNA_C-tenellus_contig7197.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7197.4.1
Unique NamemRNA_C-tenellus_contig7197.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig7197.4.1 vs. uniprot
Match: D7FX86_ECTSI (Nucleoside diphosphate kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX86_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 2.450e-78
Identity = 125/202 (61.88%), Postives = 147/202 (72.77%), Query Frame = 2 
Query:  137 VFAWLLAFLFLLPPLHATSSAPTCSSTNVVPGSCTA--AGPEEESPVP-FTGLPGTASERSFFAIKPDGVQRGLVGEVLTRFERKGWKLVALKLVVPSRTLVENHYEEHMGKPFFENLVTYFCSGPVVAMVWEGNNTIAGGRKMLGATNPLDAEIGTIRGDFCTSAGRNLVHASDSPQSALREIGLWFREEETTHWTRSNDP 733
            +FA L    F   P   T+  P       +P SC +   GPE++     +TG+PG+ +ERSFFAIKPDG+QRGLVGEV++RFERKGWKLV LK++ P R LVE HYEEH  K FFE L+ Y CSGPVVAMVWEG+N IAGGRK+LGATNPL+A  GTIRGD CT+AGRNLVHASD P+SA REI LWF  EET  W R+ DP
Sbjct:   11 LFACLSCISFAQSPARTTAPVP-------LPSSCPSPTTGPEQQQDGDAWTGMPGSITERSFFAIKPDGLQRGLVGEVMSRFERKGWKLVGLKMLTPGRQLVERHYEEHADKDFFEKLLDYMCSGPVVAMVWEGHNVIAGGRKLLGATNPLEAGAGTIRGDLCTNAGRNLVHASDGPESARREIELWFSREETVQWGRATDP 205
[Close]
BLAST of mRNA_C-tenellus_contig7197.4.1 vs. uniprot
Match: A0A835Z9B5_9STRA (Nucleoside diphosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B5_9STRA)

HSP 1 Score: 217 bits (553), Expect = 3.280e-65
Identity = 102/160 (63.75%), Postives = 121/160 (75.62%), Query Frame = 2 
Query:  272 PFTGLPGTASERSFFAIKPDGVQRGLVGEVLTRFERKGWKLVALKLVVPSRTLVENHYEEHMGKPFFENLVTYFCSGPVVAMVWEGNNTIAGGRKMLGATNPLDAEIGTIRGDFCTSAGRNLVHASDSPQSALREIGLWFREEETTHWTRSNDPWIVKGN 751
            P+TG PGT +ERSF AIKP+G+QRGLVG+V+TRFERKG KLVALKL  P+   V  HY EH GKPFF  LV + CSGP+V MVWEG N I GGR+MLG T+PL+AE GTIRGD C  + RNLVHASD+P SALREI LWF E E   W R+++ ++   N
Sbjct:   37 PYTGSPGTLAERSFVAIKPEGLQRGLVGDVITRFERKGLKLVALKLEQPTPAKVRQHYAEHEGKPFFAGLVRHMCSGPLVLMVWEGPNVIEGGRRMLGKTDPLEAEPGTIRGDLCVCSTRNLVHASDAPDSALREIRLWFSEAELAPWGRTSEEYLTGTN 196
[Close]
BLAST of mRNA_C-tenellus_contig7197.4.1 vs. uniprot
Match: A0A835YSZ5_9STRA (Nucleoside diphosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ5_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.870e-64
Identity = 94/160 (58.75%), Postives = 125/160 (78.12%), Query Frame = 2 
Query:  272 PFTGLPGTASERSFFAIKPDGVQRGLVGEVLTRFERKGWKLVALKLVVPSRTLVENHYEEHMGKPFFENLVTYFCSGPVVAMVWEGNNTIAGGRKMLGATNPLDAEIGTIRGDFCTSAGRNLVHASDSPQSALREIGLWFREEETTHWTRSNDPWIVKGN 751
            P+TG+ GT +ERSF AIKPDGVQRGL+ EV++RFE+KG+KLVA+K++  +  +  NHY++  G+PFF  LV YF SGP+VAMVWEG + I  GRK+LGATNP  A++GT+RGDFC + GRN++H SD P+SA  EIG+WF E+E + ++RS D WIV  N
Sbjct:   64 PYTGVAGTGNERSFIAIKPDGVQRGLIAEVISRFEKKGYKLVAMKMIWATEEMAANHYDDLKGRPFFPALVKYFASGPIVAMVWEGPDVIKTGRKILGATNPQAADVGTLRGDFCLTTGRNIIHGSDGPESAAHEIGMWFTEKECSAYSRSIDSWIVADN 223
[Close]
BLAST of mRNA_C-tenellus_contig7197.4.1 vs. uniprot
Match: D7FGR6_ECTSI (NDK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGR6_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 4.550e-63
Identity = 97/159 (61.01%), Postives = 119/159 (74.84%), Query Frame = 2 
Query:  275 FTGLPGTASERSFFAIKPDGVQRGLVGEVLTRFERKGWKLVALKLVVPSRTLVENHYEEHMGKPFFENLVTYFCSGPVVAMVWEGNNTIAGGRKMLGATNPLDAEIGTIRGDFCTSAGRNLVHASDSPQSALREIGLWFREEETTHWTRSNDPWIVKGN 751
            +TG PGTA ERSF AIKPDGVQR LVGEV++RFE+KG+KLVA+K++ P++ +  NHY +   KPFF  LV YF SGP+VAMVWEG   I  GRKMLGATNP  +E G++RGD+C   GRNL+H SD  +SA  EIG+WF EEE + W R+ D WIV  N
Sbjct:   79 YTGEPGTAHERSFIAIKPDGVQRQLVGEVISRFEKKGYKLVAMKMIWPTKEMAANHYADLSKKPFFSGLVDYFSSGPIVAMVWEGPEVILTGRKMLGATNPNSSEPGSLRGDYCIRVGRNLIHGSDGGESAQHEIGMWFTEEECSAWPRTLDAWIVADN 237
[Close]
BLAST of mRNA_C-tenellus_contig7197.4.1 vs. uniprot
Match: A0A6G0XYC2_9STRA (Nucleoside diphosphate kinase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYC2_9STRA)

HSP 1 Score: 212 bits (539), Expect = 7.670e-63
Identity = 96/160 (60.00%), Postives = 117/160 (73.12%), Query Frame = 2 
Query:  272 PFTGLPGTASERSFFAIKPDGVQRGLVGEVLTRFERKGWKLVALKLVVPSRTLVENHYEEHMGKPFFENLVTYFCSGPVVAMVWEGNNTIAGGRKMLGATNPLDAEIGTIRGDFCTSAGRNLVHASDSPQSALREIGLWFREEETTHWTRSNDPWIVKGN 751
            P+TG+PGT +ER+F AIKPDGV+RGL+ EV+ RFE+KG+KL+ALKL+ P+      HY +  G+PFF  LV YF SGP+VAMVWEG + I  GRK+LGATNP  A  GT+RGD C S GRNLVH SD P+SA  EIG+WF  EE   + RS D WIV  N
Sbjct:   62 PYTGIPGTKNERTFIAIKPDGVERGLISEVIARFEKKGYKLIALKLLTPTEARAREHYADLAGRPFFNGLVKYFSSGPIVAMVWEGTDVILTGRKILGATNPNQAAPGTLRGDNCISTGRNLVHGSDGPESAKHEIGMWFTAEEIQDYERSIDEWIVADN 221
[Close]
BLAST of mRNA_C-tenellus_contig7197.4.1 vs. uniprot
Match: A0A485KUH1_9STRA (Nucleoside diphosphate kinase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUH1_9STRA)

HSP 1 Score: 210 bits (535), Expect = 3.030e-62
Identity = 96/160 (60.00%), Postives = 116/160 (72.50%), Query Frame = 2 
Query:  272 PFTGLPGTASERSFFAIKPDGVQRGLVGEVLTRFERKGWKLVALKLVVPSRTLVENHYEEHMGKPFFENLVTYFCSGPVVAMVWEGNNTIAGGRKMLGATNPLDAEIGTIRGDFCTSAGRNLVHASDSPQSALREIGLWFREEETTHWTRSNDPWIVKGN 751
            P+TG+PGT +ER+F AIKPDGV+RGL+ EV+ RFE+KG+KLVALKL+ P+      HY +  G+PFF  LV YF SGP+VAMVWEG + I  GRK+LGATNP  A  GT+RGD C S GRNLVH SD P SA  EIG+WF + E   + RS D WIV  N
Sbjct:   62 PYTGIPGTKNERTFIAIKPDGVERGLISEVIARFEKKGYKLVALKLLTPTEARAREHYADLSGRPFFNGLVKYFSSGPIVAMVWEGTDVILTGRKILGATNPNQAPPGTLRGDNCISTGRNLVHGSDGPDSAKHEIGMWFTQAEINDYHRSIDDWIVADN 221
[Close]
BLAST of mRNA_C-tenellus_contig7197.4.1 vs. uniprot
Match: L8GQE5_ACACA (Nucleoside diphosphate kinase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQE5_ACACA)

HSP 1 Score: 211 bits (536), Expect = 3.450e-62
Identity = 94/159 (59.12%), Postives = 117/159 (73.58%), Query Frame = 2 
Query:  269 VPFTGLPGTASERSFFAIKPDGVQRGLVGEVLTRFERKGWKLVALKLVVPSRTLVENHYEEHMGKPFFENLVTYFCSGPVVAMVWEGNNTIAGGRKMLGATNPLDAEIGTIRGDFCTSAGRNLVHASDSPQSALREIGLWFREEETTHWTRSNDPWIVK 745
            VP TGLPGT  ER+F AIKPDGVQRG+VGE++ RFE+KG+KLV LK+V P++   E HY +   KPFF +LV YF SGPVVAMV+EG N I  GRK++GATNP DAE G++RGD C   GRN++H SD P+SA  EI LWF+E E  +W   N  W+ +
Sbjct:   76 VPHTGLPGTRFERTFIAIKPDGVQRGIVGEIIQRFEKKGYKLVGLKVVKPTKQFAEQHYADLSKKPFFPSLVNYFSSGPVVAMVFEGRNAIVNGRKIVGATNPADAEAGSVRGDLCIDIGRNIIHGSDGPESAKDEISLWFKEGELANWESENAKWVYE 234
[Close]
BLAST of mRNA_C-tenellus_contig7197.4.1 vs. uniprot
Match: A0A5J6Q2D9_9SYNE (Nucleoside diphosphate kinase n=1 Tax=Synechococcus sp. RSCCF101 TaxID=2511069 RepID=A0A5J6Q2D9_9SYNE)

HSP 1 Score: 207 bits (527), Expect = 5.030e-62
Identity = 97/150 (64.67%), Postives = 112/150 (74.67%), Query Frame = 2 
Query:  296 ASERSFFAIKPDGVQRGLVGEVLTRFERKGWKLVALKLVVPSRTLVENHYEEHMGKPFFENLVTYFCSGPVVAMVWEGNNTIAGGRKMLGATNPLDAEIGTIRGDFCTSAGRNLVHASDSPQSALREIGLWFREEETTHWTRSNDPWIVK 745
            A+ER+F AIKPDGVQRGLV E+L RFERKG+KLVALK + P R L E HYE H  +PFF  LV +  SGPVVAMVWEGNN IA GRKM+GAT P +AE GTIRGDF    GRN+VH SD P++A  EIGLWFR EE   W+ S+  W V+
Sbjct:    2 ATERTFIAIKPDGVQRGLVAEILGRFERKGFKLVALKQLTPGRDLAEKHYEVHSSRPFFSGLVDFMTSGPVVAMVWEGNNVIACGRKMIGATKPHEAEPGTIRGDFAVDIGRNIVHGSDGPETAAFEIGLWFRPEELNEWSPSDQTWRVE 151
[Close]
BLAST of mRNA_C-tenellus_contig7197.4.1 vs. uniprot
Match: A0A812N0D1_9DINO (Nucleoside diphosphate kinase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N0D1_9DINO)

HSP 1 Score: 207 bits (528), Expect = 2.200e-61
Identity = 92/160 (57.50%), Postives = 114/160 (71.25%), Query Frame = 2 
Query:  272 PFTGLPGTASERSFFAIKPDGVQRGLVGEVLTRFERKGWKLVALKLVVPSRTLVENHYEEHMGKPFFENLVTYFCSGPVVAMVWEGNNTIAGGRKMLGATNPLDAEIGTIRGDFCTSAGRNLVHASDSPQSALREIGLWFREEETTHWTRSNDPWIVKGN 751
            P TG+PGTA ER+F A KPD VQR LVGE++ RFE KGWKLV LK+V P++ L   HY +   KPFF+ LV +F SGP+VAMVWEG N I GGRK++G TNPLD+  G+IRGD C   GRN++H SD P+SA  EI  WF  EE   +T  ++ WI+ GN
Sbjct:   49 PHTGVPGTAKERTFIACKPDAVQRKLVGEIIRRFEAKGWKLVGLKMVHPTKELASAHYADLSSKPFFDGLVDFFSSGPIVAMVWEGTNCIKGGRKLMGTTNPLDSTPGSIRGDLCVQVGRNIIHGSDGPESAQAEIANWFTPEELVEYTTVDEAWILAGN 208
[Close]
BLAST of mRNA_C-tenellus_contig7197.4.1 vs. uniprot
Match: A0A7S2XZK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZK8_9STRA)

HSP 1 Score: 207 bits (528), Expect = 3.340e-61
Identity = 94/161 (58.39%), Postives = 117/161 (72.67%), Query Frame = 2 
Query:  269 VPFTGLPGTASERSFFAIKPDGVQRGLVGEVLTRFERKGWKLVALKLVVPSRTLVENHYEEHMGKPFFENLVTYFCSGPVVAMVWEGNNTIAGGRKMLGATNPLDAEIGTIRGDFCTSAGRNLVHASDSPQSALREIGLWFREEETTHWTRSNDPWIVKGN 751
            VP+TGLPGTA ER+F A+KPDGVQRGLVGE++ RFE+KG+KLVA+KL+  +    + HY +   +PFF  LV YF SGP+V MVWEG + +  GRKMLGATNPL ++ GTIRGDFC   GRNL+H SD+  SA +EI  WF  EE   W R+ D WI + N
Sbjct:   61 VPYTGLPGTAHERTFIAVKPDGVQRGLVGEIIARFEKKGYKLVAMKLIWATEEKTKAHYSDLAARPFFGGLVKYFSSGPIVGMVWEGPDAVKTGRKMLGATNPLASDPGTIRGDFCVVVGRNLIHGSDATDSAEKEIANWFTPEECYDWPRTLDAWITEDN 221
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7197.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX86_ECTSI2.450e-7861.88Nucleoside diphosphate kinase n=2 Tax=Ectocarpus T... [more]
A0A835Z9B5_9STRA3.280e-6563.75Nucleoside diphosphate kinase n=1 Tax=Tribonema mi... [more]
A0A835YSZ5_9STRA1.870e-6458.75Nucleoside diphosphate kinase n=1 Tax=Tribonema mi... [more]
D7FGR6_ECTSI4.550e-6361.01NDK domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6G0XYC2_9STRA7.670e-6360.00Nucleoside diphosphate kinase n=1 Tax=Aphanomyces ... [more]
A0A485KUH1_9STRA3.030e-6260.00Nucleoside diphosphate kinase n=1 Tax=Aphanomyces ... [more]
L8GQE5_ACACA3.450e-6259.12Nucleoside diphosphate kinase n=1 Tax=Acanthamoeba... [more]
A0A5J6Q2D9_9SYNE5.030e-6264.67Nucleoside diphosphate kinase n=1 Tax=Synechococcu... [more]
A0A812N0D1_9DINO2.200e-6157.50Nucleoside diphosphate kinase n=1 Tax=Symbiodinium... [more]
A0A7S2XZK8_9STRA3.340e-6158.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7197contigC-tenellus_contig7197:3949..6251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FX86
PFAMsNDK
Model size1364
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00940
KEGG ReactionR00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895
KEGG Pathwayko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016
KEGG ModuleM00049,M00050,M00052,M00053
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006139,GO:0006163,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019693,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046939,GO:0055086,GO:0061508,GO:0070013,GO:0071704,GO:0072521,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Exons5
Evalue4.76e-82
EggNOG OGsCOG0105@1|root,KOG0888@2759|Eukaryota
Ec32 ortholog descriptionNucleoside diphosphate kinase
Ec32 orthologEc-26_003930.1
EC2.7.4.6
DescriptionNucleoside diphosphate kinase
Cds size636
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7197.4.1prot_C-tenellus_contig7197.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7197 4067..5641 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790019.6777544-UTR-C-tenellus_contig7197:3948..40661680790019.6777544-UTR-C-tenellus_contig7197:3948..4066Choristocarpus tenellus KU2346UTRC-tenellus_contig7197 3949..4066 +
1680790019.7561245-UTR-C-tenellus_contig7197:5641..62511680790019.7561245-UTR-C-tenellus_contig7197:5641..6251Choristocarpus tenellus KU2346UTRC-tenellus_contig7197 5642..6251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790019.692118-CDS-C-tenellus_contig7197:4066..42641680790019.692118-CDS-C-tenellus_contig7197:4066..4264Choristocarpus tenellus KU2346CDSC-tenellus_contig7197 4067..4264 +
1680790019.711359-CDS-C-tenellus_contig7197:4459..46061680790019.711359-CDS-C-tenellus_contig7197:4459..4606Choristocarpus tenellus KU2346CDSC-tenellus_contig7197 4460..4606 +
1680790019.7245615-CDS-C-tenellus_contig7197:4860..49531680790019.7245615-CDS-C-tenellus_contig7197:4860..4953Choristocarpus tenellus KU2346CDSC-tenellus_contig7197 4861..4953 +
1680790019.734101-CDS-C-tenellus_contig7197:5202..52721680790019.734101-CDS-C-tenellus_contig7197:5202..5272Choristocarpus tenellus KU2346CDSC-tenellus_contig7197 5203..5272 +
1680790019.74692-CDS-C-tenellus_contig7197:5513..56411680790019.74692-CDS-C-tenellus_contig7197:5513..5641Choristocarpus tenellus KU2346CDSC-tenellus_contig7197 5514..5641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7197.4.1

>prot_C-tenellus_contig7197.4.1 ID=prot_C-tenellus_contig7197.4.1|Name=mRNA_C-tenellus_contig7197.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=212bp
MAPLKQVFAWLLAFLFLLPPLHATSSAPTCSSTNVVPGSCTAAGPEEESP
VPFTGLPGTASERSFFAIKPDGVQRGLVGEVLTRFERKGWKLVALKLVVP
SRTLVENHYEEHMGKPFFENLVTYFCSGPVVAMVWEGNNTIAGGRKMLGA
TNPLDAEIGTIRGDFCTSAGRNLVHASDSPQSALREIGLWFREEETTHWT
RSNDPWIVKGN*
back to top

mRNA from alignment at C-tenellus_contig7197:3949..6251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7197.4.1 ID=mRNA_C-tenellus_contig7197.4.1|Name=mRNA_C-tenellus_contig7197.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2303bp|location=Sequence derived from alignment at C-tenellus_contig7197:3949..6251+ (Choristocarpus tenellus KU2346)
GTTGCAGGGTTGAGGTTGAAATTTGATGTGATTGAGGCAATTTGTTGTAC
GCACGTGAAATCGGCTGGTTAACATAAAATCCAAGGCTTAGACAGTGCAG
GTTAGCTCCAAACGCAAAATGGCACCTCTGAAACAGGTTTTCGCTTGGCT
TTTAGCCTTCCTGTTCTTGCTACCCCCCCTCCATGCTACCTCTTCCGCCC
CTACCTGTTCCTCCACAAATGTCGTGCCGGGGTCTTGCACAGCTGCTGGG
CCTGAGGAGGAGTCCCCAGTGCCCTTCACTGGCCTTCCTGGAACTGCAAG
CGAGAGATCATTCTTCGTGAGCAAAATGGGGTTAAGGCCGCCGCTTGGGC
AGTTTACGATACCATCTCTGATGGTTAATAGGTTCCACACTACTCGCAGG
GTACCGAAATGTGCAGAGTTTGTGAAGCAATCGATGAATCCTCACCCAAC
CCTGAGTACTGAAGACGATCACCCTTGAGAAGTATTGGCGTCCACCTCTC
CTCCATTACAGGCTATAAAGCCTGATGGAGTGCAAAGAGGTCTTGTGGGT
GAGGTGCTTACACGCTTTGAGCGAAAAGGGTGGAAGCTCGTGGCCCTGAA
ATTGGTTGTCCCCAGCCGGACCTTGGTGGAGAACCATTACGAGGAACACA
TGGGCAAGGTGCGTGGCACATCCCGCAGGAAGCATTGGCCTTTTACATAT
ATCCAACTTCTGTGCAGCTGCGGTGAGACTCAGGAGACAGGTAGAAATTA
TCAACACGCAATAGTACAATCTCAGATGATGCGGATATCGATGAGCATGG
GGTTGAGGAGTGAGGGGGTTTCGCATCCGAGCCTAAGCCCCCATCCTAGT
ATCTTGCCTGAACATCTGATCGTTCCCATTAACACTCTACCCCTCTCTTT
CACCTTTCGCAGCCGTTTTTTGAGAACCTCGTGACTTACTTCTGCTCGGG
CCCTGTTGTGGCTATGGTGTGGGAGGGTAACAACACTATTGCTGGCGGAA
GGAAGGTGAACTTTTATCCTGCTCCTAATACTTGGTGATTGCTTCATCTC
CAACAAAGAAATGTGCCCCCCTGCCCCCCTTCCACAAGCACCGTGCCTTG
ACTTTGTGCTCCCTAGGTAGTGCCGCCCAATACCTTACCTTGCCTATATA
CATCCCTCATCCTAAAGCCCCTCCTACATCATTATCCATATTACATTGGA
TGCTTGACTCAATCCAGATGATTTTACTGCGTGCATTTCCTTCCAAATAT
GTAGATGCTAGGAGCAACGAATCCCTTGGATGCAGAAATCGGTACAATCC
GTGGGGACTTTTGCACTTCAGCAGGTTTGCTCTCCAACTTCCATCAGTAC
AAGTAGCAGTGATGATTTCCTCTGCAATGCTGTGCTTCACTATGTCTTTG
TGACAACCATGGCTTTGGAAACAACTTCCTCAAGAAATAAAACCGTAAGA
AAAGAAATGAATTGCATATCTATGCAGGTTTGATCCTCCAAACCCTGTTG
CAAGCTGGCACAAAGTACGATAAAACCTCTCAACGACCCCCCTCACTCAT
CCCTGTTAATTGTAGGGAGAAATTTGGTTCATGCTTCAGATAGTCCACAG
TCAGCACTACGGGAGATAGGCCTATGGTTCCGGGAAGAAGAGACTACCCA
TTGGACTCGATCCAATGATCCCTGGATCGTAAAGGGCAACTAATCTCTAC
TCCAACGATGCACTGCTCCTGAATTCCCCATCTTCCATTACCTGTCCTTG
ACTTGTTCTCCCTTTCCAATGCTGTGGGCACAGGACAGTTTAGTCCACAG
TAAGCGACACAAACAATAAGAATGAAGGAAACTGTTGAATGTGTGGATAT
TTATTGATGAGATTGGTGTCTTGTTTCCCTGGATAGATTTGGTTGAGCAC
CCTTGAACACCATTTTGAGTGCAACTGTACCTCAAGAGAATTATTCACTG
GATGCCTCGTGCACTCTGTATTTCCCTTATACTTTGATATTATATGAGGT
AAGAGGCATTCACTGGATATACTGGAGTCTCGATTTTTGTTCAGGCTATT
AGGTATGGGGCAAATACTGCATCCCTCACCAAAAGCCTTAGATTGCAAAA
TGGGCTGTCACAGCACTGGCAAGGCGCTAGTGGACAGTGTGATGGAACGG
CAAATGGCCCACATTGCGTAAAGAAGTGGCATCCACTGTTGCAATATTAC
CTAAAAACCATGTGCCTTGTAGACTTTTTTCTGTGTAATATTCAAGTTCA
TTACACTTGCCAGAAGAAAATCCAATATTTCATCATAATGTGAAAATAGA
GCC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7197:3949..6251+

>mRNA_C-tenellus_contig7197.4.1 ID=mRNA_C-tenellus_contig7197.4.1|Name=mRNA_C-tenellus_contig7197.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=636bp|location=Sequence derived from alignment at C-tenellus_contig7197:3949..6251+ (Choristocarpus tenellus KU2346)
ATGGCACCTCTGAAACAGGTTTTCGCTTGGCTTTTAGCCTTCCTGTTCTT
GCTACCCCCCCTCCATGCTACCTCTTCCGCCCCTACCTGTTCCTCCACAA
ATGTCGTGCCGGGGTCTTGCACAGCTGCTGGGCCTGAGGAGGAGTCCCCA
GTGCCCTTCACTGGCCTTCCTGGAACTGCAAGCGAGAGATCATTCTTCGC
TATAAAGCCTGATGGAGTGCAAAGAGGTCTTGTGGGTGAGGTGCTTACAC
GCTTTGAGCGAAAAGGGTGGAAGCTCGTGGCCCTGAAATTGGTTGTCCCC
AGCCGGACCTTGGTGGAGAACCATTACGAGGAACACATGGGCAAGCCGTT
TTTTGAGAACCTCGTGACTTACTTCTGCTCGGGCCCTGTTGTGGCTATGG
TGTGGGAGGGTAACAACACTATTGCTGGCGGAAGGAAGATGCTAGGAGCA
ACGAATCCCTTGGATGCAGAAATCGGTACAATCCGTGGGGACTTTTGCAC
TTCAGCAGGGAGAAATTTGGTTCATGCTTCAGATAGTCCACAGTCAGCAC
TACGGGAGATAGGCCTATGGTTCCGGGAAGAAGAGACTACCCATTGGACT
CGATCCAATGATCCCTGGATCGTAAAGGGCAACTAA
back to top