mRNA_C-tenellus_contig718.9.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig718.9.1
Unique NamemRNA_C-tenellus_contig718.9.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig718.9.1 vs. uniprot
Match: A0A6H5KZU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU7_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.770e-6
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:    4 KNEGTGKLYGEWQTQPWVPEAAVDGK 81
            + EGT KLYG+WQT+PW PEAAVDGK
Sbjct:  893 EGEGTSKLYGDWQTEPWAPEAAVDGK 918
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BLAST of mRNA_C-tenellus_contig718.9.1 vs. uniprot
Match: A0A6G0WLM4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLM4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 6.690e-6
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 3 
Query:   96 QVASKFGVDYASALVGFESKAGRSVPVLDGI 188
            QVA+K G+D+A ALVG+ESKAGRSVP+ DGI
Sbjct:  526 QVATKLGIDFAPALVGWESKAGRSVPIFDGI 556
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BLAST of mRNA_C-tenellus_contig718.9.1 vs. uniprot
Match: D8LJY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY2_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 9.640e-6
Identity = 19/26 (73.08%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:    4 KNEGTGKLYGEWQTQPWVPEAAVDGK 81
            + +GT KLYG+WQT+PW PEAAVDGK
Sbjct:  845 EGDGTSKLYGDWQTEPWAPEAAVDGK 870
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig718.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZU7_9PHAE3.770e-676.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0WLM4_9STRA6.690e-674.19Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
D8LJY2_ECTSI9.640e-673.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig718contigC-tenellus_contig718:12930..13358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LJY2
Preferred nameRAD4
PFAMsBHD_1,BHD_2,BHD_3,Rad4,Transglut_core
Model size191
Max annot lvl2759|Eukaryota
KEGG koko:K10838
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
GOsGO:0000109,GO:0000111,GO:0000217,GO:0000404,GO:0000405,GO:0000715,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007346,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0010564,GO:0016020,GO:0016043,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0032135,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034644,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051716,GO:0051726,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0071944,GO:0090304,GO:0097159,GO:0104004,GO:1901360,GO:1901363,GO:1901987,GO:1901990,GO:1990391
Exons2
Evalue1.58e-06
EggNOG OGsCOG5535@1|root,KOG2179@2759|Eukaryota
Descriptionmismatch repair
Cds size189
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790018.7217388-CDS-C-tenellus_contig718:12929..130371680790018.7217388-CDS-C-tenellus_contig718:12929..13037Choristocarpus tenellus KU2346CDSC-tenellus_contig718 12930..13037 -
1680790018.733032-CDS-C-tenellus_contig718:13277..133581680790018.733032-CDS-C-tenellus_contig718:13277..13358Choristocarpus tenellus KU2346CDSC-tenellus_contig718 13278..13358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig718.9.1prot_C-tenellus_contig718.9.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig718 12930..13358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig718.9.1

>prot_C-tenellus_contig718.9.1 ID=prot_C-tenellus_contig718.9.1|Name=mRNA_C-tenellus_contig718.9.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=63bp
EKNEGTGKLYGEWQTQPWVPEAAVDGKGITLGRSHPSLVWIMHLHWLGLS
RRQGGQFLFWMA*
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mRNA from alignment at C-tenellus_contig718:12930..13358-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig718.9.1 ID=mRNA_C-tenellus_contig718.9.1|Name=mRNA_C-tenellus_contig718.9.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=429bp|location=Sequence derived from alignment at C-tenellus_contig718:12930..13358- (Choristocarpus tenellus KU2346)
GAGAAGAATGAAGGCACAGGCAAGCTGTATGGAGAGTGGCAAACACAGCC
GTGGGTGCCTGAAGCTGCAGTTGATGGAAAGGTACAAATCAGAGTGTTGA
TCAAGATCAGTAATCTGCATAAGCAATGGTGCCTCTATGTTGAAGGAACC
ATCCCTATTACCAGCTGATTTTTTACTAGAAGCCATCACCCCTGTAATGT
GTTCTGCTTGTCCCGGCACACTGTGGCAATCTATTGTAGGTACCAAGGAA
TGACCATGGTAACATTGAGTTCTTTGATTACAACCCAGCATTCTTGCCTC
CGGGGACTGCACATCTGCAAGGGCATCACATTGGGCAGGTCGCATCCAAG
TTTGGTGTGGATTATGCATCTGCATTGGTTGGGTTTGAGTCGAAGGCAGG
GCGGTCAGTTCCTGTTTTGGATGGCATAA
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Coding sequence (CDS) from alignment at C-tenellus_contig718:12930..13358-

>mRNA_C-tenellus_contig718.9.1 ID=mRNA_C-tenellus_contig718.9.1|Name=mRNA_C-tenellus_contig718.9.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=189bp|location=Sequence derived from alignment at C-tenellus_contig718:12930..13358- (Choristocarpus tenellus KU2346)
GAGAAGAATGAAGGCACAGGCAAGCTGTATGGAGAGTGGCAAACACAGCC
GTGGGTGCCTGAAGCTGCAGTTGATGGAAAGGGCATCACATTGGGCAGGT
CGCATCCAAGTTTGGTGTGGATTATGCATCTGCATTGGTTGGGTTTGAGT
CGAAGGCAGGGCGGTCAGTTCCTGTTTTGGATGGCATAA
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