mRNA_C-tenellus_contig714.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig714.3.1
Unique NamemRNA_C-tenellus_contig714.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig714.3.1 vs. uniprot
Match: H9GL34_ANOCA (Leucine-rich repeat-containing protein 51 n=2 Tax=Anolis carolinensis TaxID=28377 RepID=H9GL34_ANOCA)

HSP 1 Score: 89.0 bits (219), Expect = 6.520e-20
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    4 FEELRVLNLHGNCIDTIFGLKSLASHLTHLRSITLHGNPVTENKHYRNYILHTFPNLKKFDFGGVVKQDRESAKSW 231
            +  L  LNLHGN I ++  +  LA  L HLRS+TLHGNP+ E K YR+Y++ T PNLK FDF GV KQDR +A  W
Sbjct:  102 YYNLHNLNLHGNSIQSLSEVDKLAV-LPHLRSLTLHGNPIEEEKGYRSYVVSTLPNLKSFDFSGVTKQDRSTANVW 176
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BLAST of mRNA_C-tenellus_contig714.3.1 vs. uniprot
Match: A0A024TXS6_9STRA (Leucine-rich repeat-containing protein 51 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXS6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 8.300e-20
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 PFEELRVLNLHGNCIDTIFGLKSLASHLTHLRSITLHGNPVTENKHYRNYILHTFPNLKKFDFGGVVKQDRESAKSWAFTFRKKLNPGQFEDTLD 285
            P+ EL  ++LH N +     +  LA  LT LR +TLHGNPV E KHYRNY +H  P+L + DF  V K DRE A++W+ T+RKKL   + E+  D
Sbjct:  145 PYLELTTVHLHANQLCKYTDIDGLAV-LTKLRHLTLHGNPVEEKKHYRNYTIHHIPSLLELDFSCVTKLDREKAETWSITYRKKLARRRGEEVDD 238
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BLAST of mRNA_C-tenellus_contig714.3.1 vs. uniprot
Match: A0A3R6W5U1_9STRA (Leucine-rich repeat-containing protein 51 (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6W5U1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.060e-19
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 PFEELRVLNLHGNCIDTIFGLKSLASHLTHLRSITLHGNPVTENKHYRNYILHTFPNLKKFDFGGVVKQDRESAKSWAFTFRKKLNPGQFEDTLD 285
            P+ EL  ++LH N +     +  LA  LT LR +TLHGNPV E KHYRNY ++  P+L + DF  V K DRE A++W+ T+RKKL   + ED  D
Sbjct:   91 PYLELTTVHLHANELCKYTDIDGLAV-LTKLRHLTLHGNPVEEKKHYRNYTIYHIPSLLELDFSCVTKLDRERAETWSITYRKKLARRRGEDVDD 184
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BLAST of mRNA_C-tenellus_contig714.3.1 vs. uniprot
Match: A0A485KCK5_9STRA (Leucine-rich repeat-containing protein 51 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCK5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.640e-19
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 PFEELRVLNLHGNCIDTIFGLKSLASHLTHLRSITLHGNPVTENKHYRNYILHTFPNLKKFDFGGVVKQDRESAKSWAFTFRKKLNPGQFEDTLD 285
            P+ EL  ++LH N +     + SLA  LT LR +TLHGNPV E KHYRNY +   P+L + DF  V + DRE A++W+ T+RKKL   + ED  D
Sbjct:  144 PYVELMTVHLHANHLCKYSDIDSLAC-LTKLRHLTLHGNPVEEKKHYRNYTIFHLPSLLELDFSCVTRCDRERAEAWSITYRKKLARRRGEDIYD 237
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BLAST of mRNA_C-tenellus_contig714.3.1 vs. uniprot
Match: A0A803TXA9_ANOCA (Leucine-rich repeat-containing protein 51 n=1 Tax=Anolis carolinensis TaxID=28377 RepID=A0A803TXA9_ANOCA)

HSP 1 Score: 89.0 bits (219), Expect = 2.190e-19
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    4 FEELRVLNLHGNCIDTIFGLKSLASHLTHLRSITLHGNPVTENKHYRNYILHTFPNLKKFDFGGVVKQDRESAKSW 231
            +  L  LNLHGN I ++  +  LA  L HLRS+TLHGNP+ E K YR+Y++ T PNLK FDF GV KQDR +A  W
Sbjct:  163 YYNLHNLNLHGNSIQSLSEVDKLAV-LPHLRSLTLHGNPIEEEKGYRSYVVSTLPNLKSFDFSGVTKQDRSTANVW 237
[Close]
BLAST of mRNA_C-tenellus_contig714.3.1 vs. uniprot
Match: W4G1L4_9STRA (Leucine-rich repeat-containing protein 51 n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1L4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.180e-19
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 PFEELRVLNLHGNCIDTIFGLKSLASHLTHLRSITLHGNPVTENKHYRNYILHTFPNLKKFDFGGVVKQDRESAKSWAFTFRKKLNPGQFEDTLD 285
            P+ EL  ++LH N +     +  LA  LT LR +TLHGNPV E KHYRNY ++  P+L + DF  V K DRE A++W+ T+RKKL   + ED  D
Sbjct:  144 PYLELTTVHLHANELCKYTDIDGLAV-LTKLRHLTLHGNPVEEKKHYRNYTIYHIPSLLELDFSCVTKLDRERAETWSITYRKKLARRRGEDVDD 237
[Close]
BLAST of mRNA_C-tenellus_contig714.3.1 vs. uniprot
Match: A0A2P4XYM0_9STRA (Leucine-rich repeat-containing protein 51 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XYM0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.560e-19
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    4 FEELRVLNLHGNCIDTIFGLKSLASHLTHLRSITLHGNPVTENKHYRNYILHTFPNLKKFDFGGVVKQDRESAKSWAFTFRKKLN 258
            + +L  L+LHGN ++    + +LA  L  L SI+LHGNP+ E KHYRNY++ +FPNLK+ +F  V + DRE A++WA  ++   N
Sbjct:   98 YPDLFTLHLHGNLLNKYSDVDALAKCLPRLHSISLHGNPLEEKKHYRNYVIASFPNLKQLNFSSVTRGDREKAETWAKIYKNARN 182
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BLAST of mRNA_C-tenellus_contig714.3.1 vs. uniprot
Match: A0A418B2U2_9STRA (Leucine-rich repeat-containing protein 51 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B2U2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.850e-19
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 PFEELRVLNLHGNCIDTIFGLKSLASHLTHLRSITLHGNPVTENKHYRNYILHTFPNLKKFDFGGVVKQDRESAKSWAFTFRKKLNPGQFEDTLD 285
            P+ EL  ++LH N +     +  LA  LT LR +TLHGNPV E KHYRNY +H  P+L + DF  V K DRE A++W+ T+RKKL   + E+  D
Sbjct:  250 PYLELTTVHLHANQLCKYTDIDGLAV-LTKLRHLTLHGNPVEEKKHYRNYTIHHIPSLLELDFSCVTKLDREKAETWSITYRKKLARRRGEEVDD 343
[Close]
BLAST of mRNA_C-tenellus_contig714.3.1 vs. uniprot
Match: A0A5D6YE15_9STRA (Leucine-rich repeat-containing protein 51 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YE15_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.910e-19
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    1 PFEELRVLNLHGNCIDTIFGLKSLASHLTHLRSITLHGNPVTENKHYRNYILHTFPNLKKFDFGGVVKQDRESAKSWAFTFRKKL 255
            P+  +  L+LHGN +     + ++A  L  L S+TLHGNPV E KHYRNY++ +FP L++ DF  V K DRE A++WA  ++  L
Sbjct:  122 PYPGIFTLHLHGNKLHRYTDIDTVAESLPRLHSLTLHGNPVEEKKHYRNYVIASFPKLQQLDFSSVTKGDRERAETWATIYKSAL 206
[Close]
BLAST of mRNA_C-tenellus_contig714.3.1 vs. uniprot
Match: D0NLA7_PHYIT (Leucine-rich repeat-containing protein 51 n=10 Tax=Phytophthora TaxID=4783 RepID=D0NLA7_PHYIT)

HSP 1 Score: 85.1 bits (209), Expect = 2.120e-18
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    4 FEELRVLNLHGNCIDTIFGLKSLASHLTHLRSITLHGNPVTENKHYRNYILHTFPNLKKFDFGGVVKQDRESAKSWAFTFRKKLNPGQFED 276
            + EL  L+LHGN +     + +LA  L  L SI+LHGNP+ E KHYRNY++ +FP+LK+ +F  V   DR+ A++W   ++   N G+  D
Sbjct:  102 YPELFTLHLHGNLLSKYSDIDALAKWLPRLHSISLHGNPLEEKKHYRNYVIASFPHLKQLNFSSVTIGDRDQAETWTKIYKNARNGGKRRD 192
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig714.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H9GL34_ANOCA6.520e-2055.26Leucine-rich repeat-containing protein 51 n=2 Tax=... [more]
A0A024TXS6_9STRA8.300e-2047.37Leucine-rich repeat-containing protein 51 n=1 Tax=... [more]
A0A3R6W5U1_9STRA1.060e-1947.37Leucine-rich repeat-containing protein 51 (Fragmen... [more]
A0A485KCK5_9STRA1.640e-1947.37Leucine-rich repeat-containing protein 51 n=1 Tax=... [more]
A0A803TXA9_ANOCA2.190e-1955.26Leucine-rich repeat-containing protein 51 n=1 Tax=... [more]
W4G1L4_9STRA3.180e-1947.37Leucine-rich repeat-containing protein 51 n=9 Tax=... [more]
A0A2P4XYM0_9STRA3.560e-1944.71Leucine-rich repeat-containing protein 51 n=1 Tax=... [more]
A0A418B2U2_9STRA3.850e-1947.37Leucine-rich repeat-containing protein 51 n=1 Tax=... [more]
A0A5D6YE15_9STRA4.910e-1944.71Leucine-rich repeat-containing protein 51 n=1 Tax=... [more]
D0NLA7_PHYIT2.120e-1841.76Leucine-rich repeat-containing protein 51 n=10 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig714contigC-tenellus_contig714:9471..9785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog157072.XP_008872227.1
PFAMsC2,LRR_4,LRR_8,LRR_9
Model size315
Max annot lvl2759|Eukaryota
KEGG koko:K18626
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.36e-20
EggNOG OGsCOG4886@1|root,KOG1644@2759|Eukaryota
DescriptionU2 snRNA binding
Cds size315
COG categoryO
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790015.569038-CDS-C-tenellus_contig714:9470..97851680790015.569038-CDS-C-tenellus_contig714:9470..9785Choristocarpus tenellus KU2346CDSC-tenellus_contig714 9471..9785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig714.3.1prot_C-tenellus_contig714.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig714 9471..9785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig714.3.1

>prot_C-tenellus_contig714.3.1 ID=prot_C-tenellus_contig714.3.1|Name=mRNA_C-tenellus_contig714.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=105bp
PFEELRVLNLHGNCIDTIFGLKSLASHLTHLRSITLHGNPVTENKHYRNY
ILHTFPNLKKFDFGGVVKQDRESAKSWAFTFRKKLNPGQFEDTLDKHTTT
TIVS*
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mRNA from alignment at C-tenellus_contig714:9471..9785-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig714.3.1 ID=mRNA_C-tenellus_contig714.3.1|Name=mRNA_C-tenellus_contig714.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=315bp|location=Sequence derived from alignment at C-tenellus_contig714:9471..9785- (Choristocarpus tenellus KU2346)
CCATTTGAGGAACTTCGAGTGCTAAATCTCCATGGAAACTGTATTGACAC
AATTTTCGGACTGAAGAGCTTGGCCTCACACCTTACACATCTTAGGAGTA
TCACCCTCCATGGGAATCCTGTCACTGAGAACAAGCACTACCGCAACTAC
ATCCTTCACACCTTTCCCAACCTCAAGAAGTTTGACTTTGGTGGTGTTGT
CAAACAGGATAGGGAGAGCGCCAAGTCATGGGCTTTCACATTTCGGAAAA
AACTCAACCCTGGACAGTTTGAGGACACACTTGACAAACACACCACCACC
ACTATTGTGTCATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig714:9471..9785-

>mRNA_C-tenellus_contig714.3.1 ID=mRNA_C-tenellus_contig714.3.1|Name=mRNA_C-tenellus_contig714.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=315bp|location=Sequence derived from alignment at C-tenellus_contig714:9471..9785- (Choristocarpus tenellus KU2346)
CCATTTGAGGAACTTCGAGTGCTAAATCTCCATGGAAACTGTATTGACAC
AATTTTCGGACTGAAGAGCTTGGCCTCACACCTTACACATCTTAGGAGTA
TCACCCTCCATGGGAATCCTGTCACTGAGAACAAGCACTACCGCAACTAC
ATCCTTCACACCTTTCCCAACCTCAAGAAGTTTGACTTTGGTGGTGTTGT
CAAACAGGATAGGGAGAGCGCCAAGTCATGGGCTTTCACATTTCGGAAAA
AACTCAACCCTGGACAGTTTGAGGACACACTTGACAAACACACCACCACC
ACTATTGTGTCATGA
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