mRNA_C-tenellus_contig7135.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7135.1.1
Unique NamemRNA_C-tenellus_contig7135.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7135.1.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.010e-30
Identity = 74/187 (39.57%), Postives = 113/187 (60.43%), Query Frame = 1
Query:    1 ALVSHIWNNIQPWVHEDIRSVLERMPLSV-REGPFIGMHIRRGDKI---REAPPVETKVYLETALAYMTACSYEGDLPEECDERRTPSPAEIRAIYLASDDKDVEKEVRELAPNFFK--SDIDIVFASAGIKGFDLAHKTPTTTQHQTYWTQLFFLVDVEQLVNADLFVGTFSSNAGRLIYLLRKHV 543
            A+  ++W+N+ PW+  D+  V    P  V +E PF+G+HIRRGDK+   R A     K YLE A+ ++     EGD     D +   S  +I+ I++ASD+  V  +V+++AP++    S+ DI +AS G++G     +T T T  +TY   ++ L D++QL  ADLFVGTFSSN GRL+ LLR+ +
Sbjct:  252 AMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTHGRRASMYLCKEYLEAAVEFL-----EGD-----DSQL--SVGDIKGIWVASDEPKVIAKVKQIAPDYLPNVSEDDIFWASGGVEGGPEIGRTATRTDKETYADFVYTLADLQQLTAADLFVGTFSSNMGRLLVLLRESI 426          
BLAST of mRNA_C-tenellus_contig7135.1.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 9.170e-29
Identity = 71/186 (38.17%), Postives = 112/186 (60.22%), Query Frame = 1
Query:    1 ALVSHIWNNIQPWVHEDIRSVLERMPLSV-REGPFIGMHIRRGDKIR--EAPPVETKVYLETALAYMTACSYEGDLPEECDERRTPSPAEIRAIYLASDDKDVEKEVRELAPNFFK--SDIDIVFASAGIKGFDLAHKTPTTTQHQTYWTQLFFLVDVEQLVNADLFVGTFSSNAGRLIYLLRKHV 543
            A+  ++W+N+ PW+  D+  V    P  V +E PF+G+HIRRGDK+   EA     + YLETA+ ++     EG+     D +   S  +I+ I++ASD+  V  +V+++A ++    S+ DI +AS G++G     +T T T  +TY   ++   D++QL  ADLFVGTFSSN GRL+ LLR+ +
Sbjct:  245 AMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCEEYLETAVEFL-----EGN-----DSQL--SVGDIKGIWVASDEPKVIAKVKQIAQDYLPNVSEGDIFWASGGVEGGPEIERTATRTDQETYADFVYTFADLQQLTAADLFVGTFSSNIGRLLVLLRESI 418          
BLAST of mRNA_C-tenellus_contig7135.1.1 vs. uniprot
Match: A0A6H5LR29_9PHAE (GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.540e-28
Identity = 70/181 (38.67%), Postives = 100/181 (55.25%), Query Frame = 1
Query:   16 IWNNIQPWVHEDIRSVLERMPLSV-REGPFIGMHIRRGDKIRE--APPVETKVYLETALAYMTACSYEGDLPEECDERRTPSPAEIRAIYLASDDKDVEKEVRELAPNFFKS--DIDIVFASAGIKGFDLAHKTPTTTQHQTYWTQLFFLVDVEQLVNADLFVGTFSSNAGRLIYLLRKHV 543
            +W N+ PW+ ED+R  LER  L V R  PF+G+H+RRGDK+ E  A  VETK YL  A  +              D + +    +I AI++ASDD  V +EVR +A  +F +  D DIV+ S G +G  +     T T+ Q Y   +    D++ L    LFVGT++SN  RL+ LLR+ +
Sbjct:  109 LWKNLTPWLQEDVRKALERPDLDVFRRKPFVGLHVRRGDKVGEGEAQKVETKEYLSAAARFF-------------DNKASQDKQDIEAIWVASDDHKVVEEVRAIARQYFPNVLDEDIVWVSGGARGGAVT----THTKSQGYQGFVMVFADLKMLAAGSLFVGTYTSNVSRLVALLREGI 272          
BLAST of mRNA_C-tenellus_contig7135.1.1 vs. uniprot
Match: D8LU00_ECTSI (Similar to putative alpha-6-fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU00_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 3.990e-15
Identity = 50/152 (32.89%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   85 VREGPFIGMHIRRGDKIREAPPVETKVYLETALAYMTACSYEGDLPEECDERRTPSPAEIRAIYLASDDKDVEKEVRELAPNFFKSDI-DIVFASAGIKGFDLAHKTPTTTQHQTYWTQLFFLVDVEQLVNADLFVGTFSSNAGRLIYLLRK 537
            +R G ++G+HIRR DK  E  PV+TK YL  A+ Y+ + +   D+          +   I  I+++SDD+ V  EV++LA  FF     + V    G K   L           +Y   ++   ++E L  + +F GTFSSN GR++ L+RK
Sbjct:    1 MRSGKYVGLHIRRTDKANEVQPVKTKAYLAKAVNYLASPT--NDM----------AATNITGIWVSSDDEAVFDEVKQLASEFFPGIAPNAVLYVTGGKPVQLMRGA---ADRNSYEAMVYLRAELEMLAGSAVFSGTFSSNVGRMVALMRK 137          
BLAST of mRNA_C-tenellus_contig7135.1.1 vs. uniprot
Match: A0A8J1YCB4_OWEFU (Ofus.G26152 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1YCB4_OWEFU)

HSP 1 Score: 77.0 bits (188), Expect = 4.700e-14
Identity = 51/155 (32.90%), Postives = 75/155 (48.39%), Query Frame = 1
Query:   97 PFIGMHIRRGDKIREAPPVETKVYLETALAYMTACSYEGDLPEECDERRTPSPAEIRAIYLASDDKDVEKEVRE--------LAPNFFKSDIDIVFASAGIKGFDLAHKTPTTTQHQTYWTQLFFLVDVEQLVNADLFVGTFSSNAGRLIYLLRK 537
            P IG+HIRRGDKIREA P+ T  Y+E   AY+    +          R T    E+ +I++ASDD+ +  +++E          PN+F SD+D++                              ++DV  L   D F+GTFSSN GRL+Y L++
Sbjct:   46 PIIGVHIRRGDKIREAEPIPTYKYIERIDAYINQLGF----------RMTSH--ELPSIFIASDDRTLIGQIKEHYTQYNIIYIPNYFSSDLDLI------------------------------MLDVLLLKECDYFIGTFSSNVGRLVYELQQ 158          
BLAST of mRNA_C-tenellus_contig7135.1.1 vs. uniprot
Match: A0A8J1TML7_OWEFU (Ofus.G043198 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TML7_OWEFU)

HSP 1 Score: 67.4 bits (163), Expect = 5.630e-10
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 1
Query:  103 IGMHIRRGDKIREAPPVETKVYLETALAYMTACSYEGDLPEECDERRTPSPAEIRAIYLASDDKDVEKEVRELAPNFFKSDIDIVFASAGIKGFDLAHKTPTTTQHQTYWTQLF--FLVDVEQLVNADLFVGTFSSNAGRLIYLLRK 537
            IG+HIRRGDKI++ P    + Y+ TA  Y T  +  G                 R++Y+ASD+  + KE+ E  P+F       V+ +               T+++   T +F   + DV  L  AD F+GT+SSN GRL++ LR+
Sbjct:  197 IGIHIRRGDKIKKVPYTSIEKYISTAEEYFTNKNSSGGR---------------RSVYIASDEGKIFKELSEKYPDFT-----FVYNN-------------NETKYKRKRTDMFNEIITDVILLAQADYFIGTYSSNIGRLVHQLRQ 310          
BLAST of mRNA_C-tenellus_contig7135.1.1 vs. uniprot
Match: A0A7S0BFM2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BFM2_9RHOD)

HSP 1 Score: 64.7 bits (156), Expect = 1.940e-9
Identity = 51/176 (28.98%), Postives = 77/176 (43.75%), Query Frame = 1
Query:    7 VSHIWNNIQPWVHEDIRSVLERMPLSVREGPFIGMHIRRGDKIREAPPVETKVYLETALAYMTACSYEGDLPEECDERRTPSPAEIRAIYLASDDKDVEKEVRELAPNFFKSDIDIVFASAGIKGFDLAHKTPTTTQHQTYWTQLFFLVDVEQLVNADLFVGTFSSNAGRLIYLLR 534
            + H+W   +  + E     + R+ L  R   F+G+HIRRGDK  E P +  + Y E                      R   PA I  I+LA+DD  +  E+R+L P +        FA     G  L          QT  + +  + +++ L  A  F+GT+SSN GRL+ +LR
Sbjct:   24 MKHVWKPNRN-IQERTNDAMRRIDL--RPDEFVGLHIRRGDKALEVPLIPLESYAEIV--------------------RMSDPA-ISKIFLATDDGSIIWELRDLLPEYAI----YTFADPQSTGH-LQRNANEDPMRQTVLSTMSLVAEIDILRQAKYFIGTYSSNIGRLLAVLR 170          
BLAST of mRNA_C-tenellus_contig7135.1.1 vs. uniprot
Match: A0A7S3EDL2_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EDL2_9RHOD)

HSP 1 Score: 63.2 bits (152), Expect = 1.890e-8
Identity = 51/176 (28.98%), Postives = 80/176 (45.45%), Query Frame = 1
Query:    7 VSHIWNNIQPWVHEDIRSVLERMPLSVREGPFIGMHIRRGDKIREAPPVETKVYLETALAYMTACSYEGDLPEECDERRTPSPAEIRAIYLASDDKDVEKEVRELAPNFFKSDIDIVFASAGIKGFDLAHKTPTTTQHQTYWTQLFFLVDVEQLVNADLFVGTFSSNAGRLIYLLR 534
            + H+W   +  + E     ++RM L   +  FIG+HIRRGDK  E P +  + Y E              +   CD      PA I  I+LA+DD  +  E+R+L P +        FA     G  L          +T  + +  + +++ +  A  F+GT+SSN GRL+ +LR
Sbjct:  211 MKHVWKPNRN-IQERTNDAMQRMDLHPDQ--FIGLHIRRGDKALEVPLIPLESYAE--------------IVRMCD------PA-ITKIFLATDDGSIIWELRDLLPEYAI----YTFADPQSTGH-LQRNANEDPMRRTVLSTMSLVAEIDIIRQAKYFIGTYSSNIGRLLAVLR 357          
BLAST of mRNA_C-tenellus_contig7135.1.1 vs. uniprot
Match: H2Y0J1_CIOIN (GT23 domain-containing protein n=3 Tax=Ciona intestinalis TaxID=7719 RepID=H2Y0J1_CIOIN)

HSP 1 Score: 58.5 bits (140), Expect = 8.180e-7
Identity = 49/181 (27.07%), Postives = 80/181 (44.20%), Query Frame = 1
Query:    7 VSHIWNNI---QPWVHEDIRSVLERMPLSVREGPFIGMHIRRGDKIREAPPVETKVYLETALAYMTACSYEGDLPEECDERRTPSPAEIRAIYLASDDKDVEKEVRELAPNFFKSDIDIVFASAGIKGFDLAHKTPTTTQHQTYWTQLFFLVDVEQLVNADLFVGTFSSNAGRLIYLLRKH 540
            + H+ N     Q  V ++  SV   +  +    P +G+HIRR DKI EAP  + + Y++   ++                 + PS   IR +YLA+D  +V +E +   P +        F +A  K F  +    + +  +  W  +  L D       D  V TFSSN GRL+Y L+++
Sbjct:  312 IGHVMNYFLRPQQLVEDEFTSVKREIQFA---HPIVGIHIRRRDKISEAPYYDLERYMDHVESWYGRYFM-----------KHPSENVIRRVYLATDASEVVEEAKIRYPKY-------AFITALGKLFKESQNRQSASAVKCIWYDVLLLRD------CDFAVVTFSSNVGRLVYELKQN 465          
BLAST of mRNA_C-tenellus_contig7135.1.1 vs. uniprot
Match: D8LU01_ECTSI (GT23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU01_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.030e-6
Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 1
Query:    4 LVSHIWNNIQPWVHEDIRSVLERMPLS-VREGPFIGMHIRRGDKIREAPPVETKVYLETALAYMTACSYEGDLPEECDERRTPSPAEIRAIYLASDDKDVEKEV 312
            LV H+ + +QPW   DI+ +L+   ++ +R G ++GMHIRR DK  E    +T+VY      Y+   S  G L            A+I  ++L++D+  V  EV
Sbjct:  138 LVDHLHSYLQPWFKADIQRILDEPDIAEMRNGKYVGMHIRRTDKANETKLTKTEVYFRKVAQYLR--SSPGGL----------RAADITGLWLSTDEVSVFNEV 229          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7135.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G435_ECTSI1.010e-3039.57Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
A0A6H5JTL0_9PHAE9.170e-2938.17GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5LR29_9PHAE1.540e-2838.67GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D8LU00_ECTSI3.990e-1532.89Similar to putative alpha-6-fucosyltransferase n=1... [more]
A0A8J1YCB4_OWEFU4.700e-1432.90Ofus.G26152 protein n=1 Tax=Owenia fusiformis TaxI... [more]
A0A8J1TML7_OWEFU5.630e-1031.97Ofus.G043198 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A7S0BFM2_9RHOD1.940e-928.98Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3EDL2_9RHOD1.890e-828.98Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
H2Y0J1_CIOIN8.180e-727.07GT23 domain-containing protein n=3 Tax=Ciona intes... [more]
D8LU01_ECTSI1.030e-632.69GT23 domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7135contigC-tenellus_contig7135:288..1100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G435
Model size543
Max annot lvl2759|Eukaryota
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.65e-31
EggNOG OGsKOG3705@1|root,KOG3705@2759|Eukaryota
EC2.4.1.68
Descriptionglycoprotein 6-alpha-L-fucosyltransferase activity
Cds size543
COG categoryM
CAZyGT23
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790015.2677133-CDS-C-tenellus_contig7135:287..4071680790015.2677133-CDS-C-tenellus_contig7135:287..407Choristocarpus tenellus KU2346CDSC-tenellus_contig7135 288..407 -
1680790015.2792675-CDS-C-tenellus_contig7135:677..11001680790015.2792675-CDS-C-tenellus_contig7135:677..1100Choristocarpus tenellus KU2346CDSC-tenellus_contig7135 678..1100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7135.1.1prot_C-tenellus_contig7135.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7135 288..1100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7135.1.1

>prot_C-tenellus_contig7135.1.1 ID=prot_C-tenellus_contig7135.1.1|Name=mRNA_C-tenellus_contig7135.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=181bp
ALVSHIWNNIQPWVHEDIRSVLERMPLSVREGPFIGMHIRRGDKIREAPP
VETKVYLETALAYMTACSYEGDLPEECDERRTPSPAEIRAIYLASDDKDV
EKEVRELAPNFFKSDIDIVFASAGIKGFDLAHKTPTTTQHQTYWTQLFFL
VDVEQLVNADLFVGTFSSNAGRLIYLLRKHV
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mRNA from alignment at C-tenellus_contig7135:288..1100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7135.1.1 ID=mRNA_C-tenellus_contig7135.1.1|Name=mRNA_C-tenellus_contig7135.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=813bp|location=Sequence derived from alignment at C-tenellus_contig7135:288..1100- (Choristocarpus tenellus KU2346)
GCATTGGTTTCTCATATTTGGAACAATATTCAACCATGGGTTCATGAAGA TATTCGGTCGGTTCTGGAAAGGATGCCCCTAAGCGTGCGTGAGGGCCCAT TCATTGGCATGCACATCAGACGTGGGGACAAGATACGTGAGGCCCCACCC GTTGAGACTAAGGTGTACCTCGAAACAGCACTGGCATACATGACTGCGTG CAGTTACGAGGGTGATCTTCCAGAAGAATGTGACGAGAGACGGACACCAT CGCCTGCAGAAATTAGAGCAATATACTTGGCTTCAGATGACAAGGATGTG GAGAAGGAAGTGAGGGAACTAGCCCCAAACTTCTTCAAGTCTGACATAGA CATTGTCTTCGCATCAGCAGGGATCAAAGGATTCGACCTAGCTCACAAGA CCCCCACCACGACTCAACATCAGGTACGTTTGTGGGGTACCATAATATAG GATTGCCAAACGAACCTGGTAAATTCATCATGATTTTAGCGAGAAATAAC TGTGCAGGAAGTACATCCGTTGACCTACATGTAGTTCATTGTGATTCTGT TCCCACTTGTATGTGATCCTAGTTTGAGCAAGTCAACAAGCTCGTAGTCA ACAGCTAATGTCTTGTTTGTTCTTGATGCCACTCCTATAACGGTTTGACT TTGCTTCCTTGTCCTTGCATTATCGCCCCAAAAAACACGATAGACCTACT GGACCCAATTGTTCTTCCTTGTGGATGTGGAACAGCTTGTCAACGCTGAC TTGTTTGTGGGGACTTTTTCGAGCAATGCTGGTCGACTAATCTATCTTTT GAGGAAACATGTT
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Coding sequence (CDS) from alignment at C-tenellus_contig7135:288..1100-

>mRNA_C-tenellus_contig7135.1.1 ID=mRNA_C-tenellus_contig7135.1.1|Name=mRNA_C-tenellus_contig7135.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=543bp|location=Sequence derived from alignment at C-tenellus_contig7135:288..1100- (Choristocarpus tenellus KU2346)
GCATTGGTTTCTCATATTTGGAACAATATTCAACCATGGGTTCATGAAGA
TATTCGGTCGGTTCTGGAAAGGATGCCCCTAAGCGTGCGTGAGGGCCCAT
TCATTGGCATGCACATCAGACGTGGGGACAAGATACGTGAGGCCCCACCC
GTTGAGACTAAGGTGTACCTCGAAACAGCACTGGCATACATGACTGCGTG
CAGTTACGAGGGTGATCTTCCAGAAGAATGTGACGAGAGACGGACACCAT
CGCCTGCAGAAATTAGAGCAATATACTTGGCTTCAGATGACAAGGATGTG
GAGAAGGAAGTGAGGGAACTAGCCCCAAACTTCTTCAAGTCTGACATAGA
CATTGTCTTCGCATCAGCAGGGATCAAAGGATTCGACCTAGCTCACAAGA
CCCCCACCACGACTCAACATCAGACCTACTGGACCCAATTGTTCTTCCTT
GTGGATGTGGAACAGCTTGTCAACGCTGACTTGTTTGTGGGGACTTTTTC
GAGCAATGCTGGTCGACTAATCTATCTTTTGAGGAAACATGTT
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