mRNA_C-tenellus_contig6822.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6822.2.1
Unique NamemRNA_C-tenellus_contig6822.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6822.2.1 vs. uniprot
Match: A0A6H5KMQ0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.990e-20
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    4 NVSLVVKSTPQKTIASLSKIATCEGKVIKLNDSAQWRERYALLVPHTFLYYFDK----VDPRPRGTIDLEHYTRIEILEG 231
            NV L VKS+P+KT A+LS +A  EG + KLNDS  WR+R ALLVPHTFLYYF +     D RP G IDLE YT I++++G
Sbjct:   36 NVHLSVKSSPEKTAAALSLLAEREGLITKLNDSGSWRKRRALLVPHTFLYYFSEHTAETDLRPHGVIDLELYTDIQVVDG 115
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BLAST of mRNA_C-tenellus_contig6822.2.1 vs. uniprot
Match: D8LCD8_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD8_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.400e-19
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    4 NVSLVVKSTPQKTIASLSKIATCEGKVIKLNDSAQWRERYALLVPHTFLYYFDK----VDPRPRGTIDLEHYTRIEILEG 231
            NV L VKS+P+KT A+LS +A  EG + K NDS  WR R ALLVPHTFLYYF +     D RP G IDLE YT I++++G
Sbjct:   36 NVHLSVKSSPEKTAAALSLLAEREGLITKQNDSGSWRRRRALLVPHTFLYYFGEHTAETDLRPHGVIDLELYTDIQVVDG 115
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BLAST of mRNA_C-tenellus_contig6822.2.1 vs. uniprot
Match: A0A835YRZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.480e-14
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 MNVSLVVKSTPQKTIASLSKIATCEGKVIKLNDSAQWRERYALLVPHTFLYYFDKVD-PRPRGTIDLEHYTRIEILEG 231
            +N ++ +K++P KT A+L+  A   G+ +K N   +W  R  ++VPH FLYYF + D   P G IDLE YTR E+LEG
Sbjct:   41 LNTTITIKASPPKTAAALAARALRSGRALKRNKQLEWHGRVCMVVPHAFLYYFGEDDLAAPHGIIDLEAYTRSEVLEG 118
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BLAST of mRNA_C-tenellus_contig6822.2.1 vs. uniprot
Match: A0A7R9U5P2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5P2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.160e-11
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:   10 SLVVKSTPQKTIASLSKIATCEGKVIKLNDSAQWRERYALLVPHTFLYYFD-KVDPRPRGTIDLEHYTRIEILEGE 234
            +L VKS    T  +LS+ +   G + K N+  QW+ RY ++VPH+FLYYF+ +    PRG IDLE Y    + EG+
Sbjct:   55 TLTVKSMEHPTAPTLSQQSIHCGYLEKRNEQGQWQRRYCIMVPHSFLYYFESETAETPRGVIDLEAYHNCSVEEGD 130
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BLAST of mRNA_C-tenellus_contig6822.2.1 vs. uniprot
Match: A0A835Z0T3_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.190e-10
Identity = 28/80 (35.00%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:   10 SLVVKSTPQKTIASLSKIATCEGKVIKLNDSAQWRERYALLVPHTFLYYFDKVDPR-PRGTIDLEHYTRIEILEGEPTLL 246
            +LVVKS+P +   +  ++    G ++K N+   W+ R+ ++VPHT+LYYF+  +   PRG IDLE Y+ I   + + +++
Sbjct:   29 TLVVKSSPLRDAQTTKRLGVRSGWLLKRNEQRVWQPRFCVMVPHTYLYYFESENSAAPRGIIDLEPYSEIAAQQNDSSVV 108
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6822.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KMQ0_9PHAE1.990e-2058.75PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LCD8_ECTSI2.400e-1957.50N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A835YRZ5_9STRA4.480e-1444.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U5P2_9STRA3.160e-1142.11Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A835Z0T3_9STRA7.190e-1035.00PH domain-containing protein n=1 Tax=Tribonema min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6822contigC-tenellus_contig6822:5216..5464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LCP7
PFAMsPH
Model size249
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.56e-14
EggNOG OGs2E9MN@1|root,2SFYW@2759|Eukaryota
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-26_004600.1
DescriptionPleckstrin homology domain.
Cds size249
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789995.2969055-CDS-C-tenellus_contig6822:5215..54641680789995.2969055-CDS-C-tenellus_contig6822:5215..5464Choristocarpus tenellus KU2346CDSC-tenellus_contig6822 5216..5464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6822.2.1prot_C-tenellus_contig6822.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6822 5216..5464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6822.2.1

>prot_C-tenellus_contig6822.2.1 ID=prot_C-tenellus_contig6822.2.1|Name=mRNA_C-tenellus_contig6822.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=83bp
MNVSLVVKSTPQKTIASLSKIATCEGKVIKLNDSAQWRERYALLVPHTFL
YYFDKVDPRPRGTIDLEHYTRIEILEGEPTLLP
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mRNA from alignment at C-tenellus_contig6822:5216..5464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6822.2.1 ID=mRNA_C-tenellus_contig6822.2.1|Name=mRNA_C-tenellus_contig6822.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=249bp|location=Sequence derived from alignment at C-tenellus_contig6822:5216..5464- (Choristocarpus tenellus KU2346)
ATGAACGTTTCCCTTGTGGTAAAAAGCACTCCACAGAAGACTATCGCCTC
TCTCTCCAAAATTGCGACCTGTGAGGGCAAGGTCATCAAGCTTAATGATT
CAGCTCAGTGGCGAGAGAGGTACGCCCTCCTTGTTCCCCACACCTTTCTA
TACTACTTCGACAAGGTCGATCCGCGACCCCGTGGGACCATCGACCTAGA
GCATTACACACGCATCGAGATTCTTGAAGGTGAGCCCACACTCCTGCCA
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Coding sequence (CDS) from alignment at C-tenellus_contig6822:5216..5464-

>mRNA_C-tenellus_contig6822.2.1 ID=mRNA_C-tenellus_contig6822.2.1|Name=mRNA_C-tenellus_contig6822.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=249bp|location=Sequence derived from alignment at C-tenellus_contig6822:5216..5464- (Choristocarpus tenellus KU2346)
ATGAACGTTTCCCTTGTGGTAAAAAGCACTCCACAGAAGACTATCGCCTC
TCTCTCCAAAATTGCGACCTGTGAGGGCAAGGTCATCAAGCTTAATGATT
CAGCTCAGTGGCGAGAGAGGTACGCCCTCCTTGTTCCCCACACCTTTCTA
TACTACTTCGACAAGGTCGATCCGCGACCCCGTGGGACCATCGACCTAGA
GCATTACACACGCATCGAGATTCTTGAAGGTGAGCCCACACTCCTGCCA
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