mRNA_C-tenellus_contig6810.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6810.1.1
Unique NamemRNA_C-tenellus_contig6810.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6810.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6810contigC-tenellus_contig6810:44..1090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size736
Hectar predicted targeting categoryother localisation
Exons2
Cds size735
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789994.542382-CDS-C-tenellus_contig6810:44..2931680789994.542382-CDS-C-tenellus_contig6810:44..293Choristocarpus tenellus KU2346CDSC-tenellus_contig6810 45..293 -
1680789994.552757-CDS-C-tenellus_contig6810:604..10901680789994.552757-CDS-C-tenellus_contig6810:604..1090Choristocarpus tenellus KU2346CDSC-tenellus_contig6810 605..1090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6810.1.1prot_C-tenellus_contig6810.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6810 45..1090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6810.1.1

>prot_C-tenellus_contig6810.1.1 ID=prot_C-tenellus_contig6810.1.1|Name=mRNA_C-tenellus_contig6810.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=245bp
PGVREGEVPPALVGIASQSKGGELAGLQGRGGGELVEDGMNVKDETGEGV
RVGMGRTGESHTKEGDPFVLSPQVLDAHDMMERPQDYTPRLGGTYLGMVE
GGGEGDRGVGQSNTRGANWGAASTLPAEWQVEPESVCSSPMSLTRHTRRL
TFRQRQVEANAQARVSVLRMSRTISGASNPISPSASISMFHASKHGHSQH
GQSKQHGVQDALAGSHPGLHTGPDDHVLPHLHRGVTNSGSGGVEG
back to top

mRNA from alignment at C-tenellus_contig6810:44..1090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6810.1.1 ID=mRNA_C-tenellus_contig6810.1.1|Name=mRNA_C-tenellus_contig6810.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1047bp|location=Sequence derived from alignment at C-tenellus_contig6810:44..1090- (Choristocarpus tenellus KU2346)
CCGGGTGTTAGGGAGGGCGAGGTTCCGCCTGCTCTGGTGGGGATAGCTTC
ACAGTCGAAAGGGGGTGAACTAGCTGGGTTACAGGGTAGAGGTGGAGGGG
AGTTGGTGGAGGATGGGATGAATGTGAAGGATGAGACAGGGGAAGGAGTT
CGGGTAGGTATGGGAAGAACAGGGGAATCACACACAAAGGAGGGGGATCC
TTTCGTGTTGTCACCCCAGGTTCTGGACGCTCACGACATGATGGAGCGGC
CCCAGGATTACACCCCGAGACTGGGTGGGACATATTTAGGCATGGTGGAG
GGTGGTGGGGAAGGTGACAGAGGGGTGGGTCAGAGCAACACGAGGGGTGC
GAACTGGGGTGCAGCAAGCACGCTTCCAGCGGAGTGGCAGGTGGAGCCCG
AGTCTGTGTGCTCGTCTCCGATGTCTTTGACAAGGCACACACGACGATTG
ACGTTCAGACAGAGGCAGGTTGAAGCAAATGCACAGGTGAGTTCGACTTG
GTACTGCCCATACACGCCTTCCTCTGCACCAGCTCTCTCTATATTTTTTC
TATATATATATTTTTATTTTTATTTTTCATCTTATTTTGTTTTCTTTGTT
GCACCTCACAACTCACCCTTGTACCTGTTTTTGTCATTTTGCTGCGAATC
TCAACAACCTAACCAGTGCGCGTGTATAACCAGAACGACAATTGAGTCCC
CAAACCTCTCCGGTTCAATTTTGCACACGCATGGTGCTTTGCCCCTGTTC
AAGTGTCCTGACCAGAATGCCTCACCCCCCACACACCCTGGCCCCAGGCC
CGTGTATCAGTGCTAAGGATGTCCCGAACCATCTCAGGAGCGAGCAATCC
CATCTCCCCATCCGCTTCCATCAGTATGTTCCACGCCTCAAAGCATGGGC
ATTCGCAGCATGGACAATCCAAACAACATGGAGTGCAAGACGCTTTGGCC
GGCAGCCACCCTGGTCTGCACACTGGCCCAGACGATCATGTGCTGCCTCA
TCTTCATCGAGGTGTGACCAACAGTGGCAGCGGTGGAGTGGAGGGGG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig6810:44..1090-

>mRNA_C-tenellus_contig6810.1.1 ID=mRNA_C-tenellus_contig6810.1.1|Name=mRNA_C-tenellus_contig6810.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=735bp|location=Sequence derived from alignment at C-tenellus_contig6810:44..1090- (Choristocarpus tenellus KU2346)
CCGGGTGTTAGGGAGGGCGAGGTTCCGCCTGCTCTGGTGGGGATAGCTTC
ACAGTCGAAAGGGGGTGAACTAGCTGGGTTACAGGGTAGAGGTGGAGGGG
AGTTGGTGGAGGATGGGATGAATGTGAAGGATGAGACAGGGGAAGGAGTT
CGGGTAGGTATGGGAAGAACAGGGGAATCACACACAAAGGAGGGGGATCC
TTTCGTGTTGTCACCCCAGGTTCTGGACGCTCACGACATGATGGAGCGGC
CCCAGGATTACACCCCGAGACTGGGTGGGACATATTTAGGCATGGTGGAG
GGTGGTGGGGAAGGTGACAGAGGGGTGGGTCAGAGCAACACGAGGGGTGC
GAACTGGGGTGCAGCAAGCACGCTTCCAGCGGAGTGGCAGGTGGAGCCCG
AGTCTGTGTGCTCGTCTCCGATGTCTTTGACAAGGCACACACGACGATTG
ACGTTCAGACAGAGGCAGGTTGAAGCAAATGCACAGGCCCGTGTATCAGT
GCTAAGGATGTCCCGAACCATCTCAGGAGCGAGCAATCCCATCTCCCCAT
CCGCTTCCATCAGTATGTTCCACGCCTCAAAGCATGGGCATTCGCAGCAT
GGACAATCCAAACAACATGGAGTGCAAGACGCTTTGGCCGGCAGCCACCC
TGGTCTGCACACTGGCCCAGACGATCATGTGCTGCCTCATCTTCATCGAG
GTGTGACCAACAGTGGCAGCGGTGGAGTGGAGGGG
back to top