mRNA_C-tenellus_contig6763.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6763.1.1
Unique NamemRNA_C-tenellus_contig6763.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6763.1.1 vs. uniprot
Match: A0A6H5JBW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.760e-13
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 MERVLQLDHNSADARELRMCCSFANSGPLPLLFIDSIFGTHPEM 132
            ME++L L   S +ARELR C SFANSGPLPLLF+DSIFG HP M
Sbjct:   79 MEKILGLKEGSPEARELRTCTSFANSGPLPLLFVDSIFGAHPGM 122
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BLAST of mRNA_C-tenellus_contig6763.1.1 vs. uniprot
Match: D8LM61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM61_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 6.360e-13
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 MERVLQLDHNSADARELRMCCSFANSGPLPLLFIDSIFGTHPEM 132
            ME++L L   S +ARELR C SFANSGPLPLLF+DSIFG HP M
Sbjct:  104 MEKILGLKEGSPEARELRTCTSFANSGPLPLLFVDSIFGAHPGM 147
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BLAST of mRNA_C-tenellus_contig6763.1.1 vs. uniprot
Match: A0A4D9D5S5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5S5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.460e-6
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 RVLQLDHNSADARELRMCCSFANSGPLPLLFIDSIFGTHPE 129
            R++ L+  S   RE+R+C +FAN+GPLPLLF+D++F  HP+
Sbjct:  111 RLVGLNPFSEAGREVRICSTFANAGPLPLLFVDALFKNHPD 151
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BLAST of mRNA_C-tenellus_contig6763.1.1 vs. uniprot
Match: A0A7S2SS74_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS74_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.920e-5
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   10 VLQLDHNSADARELRMCCSFANSGPLPLLFIDSIF 114
            VL++   S   RELRM C+F NSGPLPLLF DS+F
Sbjct:  174 VLRVPRESIPGRELRMSCAFGNSGPLPLLFADSLF 208
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6763.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JBW8_9PHAE3.760e-1370.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM61_ECTSI6.360e-1370.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9D5S5_9STRA4.460e-651.22Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2SS74_9STRA2.920e-562.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6763contigC-tenellus_contig6763:5922..7035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8U0
PFAMsMem_trans
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K07088
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.001
EggNOG OGsCOG0679@1|root,KOG2722@2759|Eukaryota
Descriptionauxin efflux carrier
Cds size180
COG categoryB
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.2230334-CDS-C-tenellus_contig6763:5921..60481680789990.2230334-CDS-C-tenellus_contig6763:5921..6048Choristocarpus tenellus KU2346CDSC-tenellus_contig6763 5922..6048 +
1680789990.2332888-CDS-C-tenellus_contig6763:6982..70351680789990.2332888-CDS-C-tenellus_contig6763:6982..7035Choristocarpus tenellus KU2346CDSC-tenellus_contig6763 6983..7035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6763.1.1prot_C-tenellus_contig6763.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6763 5922..7035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6763.1.1

>prot_C-tenellus_contig6763.1.1 ID=prot_C-tenellus_contig6763.1.1|Name=mRNA_C-tenellus_contig6763.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=60bp
MERVLQLDHNSADARELRMCCSFANSGPLPLLFIDSIFGTHPEMGGGGGG
GGGGREGGGG
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mRNA from alignment at C-tenellus_contig6763:5922..7035+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6763.1.1 ID=mRNA_C-tenellus_contig6763.1.1|Name=mRNA_C-tenellus_contig6763.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1114bp|location=Sequence derived from alignment at C-tenellus_contig6763:5922..7035+ (Choristocarpus tenellus KU2346)
ATGGAGAGGGTTCTTCAACTGGATCACAACTCTGCTGATGCTCGTGAGCT
GAGAATGTGCTGTTCATTTGCCAACTCAGGCCCCCTCCCCCTCCTCTTCA
TTGATAGCATTTTTGGAACACACCCAGGTGGGTGATGCCGCCCAAGTCAA
CCCAGTCTAGGCGGAGTTAGTTTTGTGCTTGGGTTAGGGCAGCTAGGTGG
AGGGAGGGGTTGAATTTTTTTTCTTTGGATTTAAATGTAACACAGTTGAT
AACACACTTCATAACACAGTTGACAAGCTTAAGAATACGTCTATTAGATA
TAGGTAGAATACACCTAAACCTATATATCATTTTTTTGTTGTGTCTGTGG
TGAAATTGCGCTGACAGACTGTTATGATAATAAAATAATAAAGTTGGAGA
TTAAATGGCCATTTTTACAGCTTGTTCAACTAACCCTAACCCTAACTTGG
ATGGGACATACACATATATGTGAGATTGTCAAAAATGTAAGTTAAAAATA
ACAAGAAAACTGTATGTAGGGCTAGGTTTTATGATTTTGTAGATTATTGA
CAATGTGTGGGAGAGTAAAGGTGGTACATACCAAACTGTGATTGGTACTT
GAAAATATCCAAAGTGGTTGTTGCTACAATCAGGGCAAATGTTTTAGTCT
TAAAAGGGGTGTTGGAGGGGATAGCCTCGTCTTTAGCTAGGTTGCAGATA
AATATTTTTCTTATTTTAATAGTGTAATGTAGTATATATTTTGTAATGGA
TAGGGTTAGGGTTGAGTGTTGTTATTTTTCCTTTTGATGCAGCTGGATGC
TCTTTTGTATTGAAATGATAATGTACCCCCCCCCCCCTCTTTTCAAAAAT
ATTTTTATTTTTGTCTGACTTGAGAATACCACCTACATGCAGTATAGAGA
ATCATATATCTGGGGGGTGAAGGGGGGAGGATAGGACACTGAATAATTAA
TGACAGGGTTTGCAAAATTTACTTCCTAAGGCTGGGGACTATTGATGTGA
AGAATATCAAGGTCTTCAATGGGGTGGTAGGGTTAGGGTTAGGGTTAGGC
TTACAGGGCAGAGATGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGG
AGGGGGGAGGGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig6763:5922..7035+

>mRNA_C-tenellus_contig6763.1.1 ID=mRNA_C-tenellus_contig6763.1.1|Name=mRNA_C-tenellus_contig6763.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=180bp|location=Sequence derived from alignment at C-tenellus_contig6763:5922..7035+ (Choristocarpus tenellus KU2346)
ATGGAGAGGGTTCTTCAACTGGATCACAACTCTGCTGATGCTCGTGAGCT
GAGAATGTGCTGTTCATTTGCCAACTCAGGCCCCCTCCCCCTCCTCTTCA
TTGATAGCATTTTTGGAACACACCCAGAGATGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGCGGGAGGGGGGAGGGGGG
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