mRNA_C-tenellus_contig6574.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6574.1.1
Unique NamemRNA_C-tenellus_contig6574.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6574.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6574contigC-tenellus_contig6574:4619..4955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size338
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789977.5899508-CDS-C-tenellus_contig6574:4619..49551680789977.5899508-CDS-C-tenellus_contig6574:4619..4955Choristocarpus tenellus KU2346CDSC-tenellus_contig6574 4620..4955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6574.1.1prot_C-tenellus_contig6574.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6574 4620..4955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6574.1.1

>prot_C-tenellus_contig6574.1.1 ID=prot_C-tenellus_contig6574.1.1|Name=mRNA_C-tenellus_contig6574.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=112bp
YASYVLSRLVRCRYVLNIALGETISMKLRWCSKHHIYTTPALSHVHRTVT
FVTYTHCDVFTPMYSTPCQEKHPQSIGWLDRRLAVQIKSTFKANLPLMPW
PTHSIAFYEDIL
back to top

mRNA from alignment at C-tenellus_contig6574:4619..4955-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6574.1.1 ID=mRNA_C-tenellus_contig6574.1.1|Name=mRNA_C-tenellus_contig6574.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=337bp|location=Sequence derived from alignment at C-tenellus_contig6574:4619..4955- (Choristocarpus tenellus KU2346)
TATGCTTCCTATGTGCTTTCAAGACTAGTTAGATGTAGATATGTATTGAA
CATTGCCCTCGGTGAAACCATTTCGATGAAGCTGAGGTGGTGCAGTAAGC
ACCACATCTACACTACCCCTGCACTCTCACATGTACATAGAACTGTAACT
TTCGTAACTTACACTCATTGCGATGTATTCACTCCTATGTATAGTACACC
TTGCCAAGAAAAGCACCCGCAATCCATTGGATGGCTGGACAGACGACTCG
CAGTTCAAATCAAATCAACGTTCAAAGCCAATCTCCCTCTGATGCCCTGG
CCTACGCATTCAATTGCATTCTACGAGGATATTTTAC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig6574:4619..4955-

>mRNA_C-tenellus_contig6574.1.1 ID=mRNA_C-tenellus_contig6574.1.1|Name=mRNA_C-tenellus_contig6574.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=336bp|location=Sequence derived from alignment at C-tenellus_contig6574:4619..4955- (Choristocarpus tenellus KU2346)
TATGCTTCCTATGTGCTTTCAAGACTAGTTAGATGTAGATATGTATTGAA
CATTGCCCTCGGTGAAACCATTTCGATGAAGCTGAGGTGGTGCAGTAAGC
ACCACATCTACACTACCCCTGCACTCTCACATGTACATAGAACTGTAACT
TTCGTAACTTACACTCATTGCGATGTATTCACTCCTATGTATAGTACACC
TTGCCAAGAAAAGCACCCGCAATCCATTGGATGGCTGGACAGACGACTCG
CAGTTCAAATCAAATCAACGTTCAAAGCCAATCTCCCTCTGATGCCCTGG
CCTACGCATTCAATTGCATTCTACGAGGATATTTTA
back to top