mRNA_C-tenellus_contig6561.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6561.4.1
Unique NamemRNA_C-tenellus_contig6561.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig6561.4.1 vs. uniprot
Match: A0A6H5JLR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR5_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 4.270e-43
Identity = 76/111 (68.47%), Postives = 96/111 (86.49%), Query Frame = 2
Query:  914 CKPCGKKFVSEDARQAHLKSHVPCPESGCNFTAVRKVMSGHHASVHGHLSGSGFEMIDVEGQKFRVLLGTNPDEVALWRAERRKNWPSRDNISRKDTEAEKRRSLGDLGPD 1246
            C+PC K+F +E ARQAHL+SHVPCPE GC F+A+RK+++ HH + HG LSGSGF+MIDVEG+KFRVLLGT+PDEVA WRAERRK WP+ +N +RK+ + +KRR+LGDLGPD
Sbjct:   59 CEPCEKEFTTETARQAHLQSHVPCPEKGCGFSALRKIVNNHHEAKHGQLSGSGFQMIDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDLGPD 169          
BLAST of mRNA_C-tenellus_contig6561.4.1 vs. uniprot
Match: D7FK97_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK97_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.890e-42
Identity = 89/188 (47.34%), Postives = 119/188 (63.30%), Query Frame = 2
Query:  707 AGQTDVLRGGDISRQ----VVGTPKQERGTTKK----GNGDTGFGREGVEVRSATQTAEVGTYEGAAKESAMIVAAECKPCGKKFVSEDARQAHLKSHVPCPESGCNFTAVRKVMSGHHASVHGHLSGSGFEMIDVEGQKFRVLLGTNPDEVALWRAERRKNWPSRDNISRKDTEAEKRRSLGDLGPD 1246
            +G+ D+   G  ++Q      GT     G T      G       + G +  S    +  G   G A + +      C+PC K+F +E ARQAHL+SHVPCPE GC F+A+RK+++ HH + HG  SGSGF+MIDVEG+KFRVLLGT+PDEVA WRAERRK WP+ +N +RK+ + +KRR+LGDLGPD
Sbjct:    5 SGRNDINSSGGTAQQQQFKTAGTISNHAGATPTVGAAGARSVASDKPGAQQTSLAAASTAGAAAGGAAKLS------CEPCEKEFTTEAARQAHLQSHVPCPEKGCGFSALRKIVNNHHEAKHGQFSGSGFQMIDVEGKKFRVLLGTSPDEVAEWRAERRKRWPTDENKARKEEDEKKRRALGDLGPD 186          
BLAST of mRNA_C-tenellus_contig6561.4.1 vs. uniprot
Match: A0A7S2RYE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYE8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 6.480e-31
Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = 2
Query:  914 CKPCGKKFVSEDARQAHLKSHVPCPESGCNFTAVRKVMSGHHASVHGHLSGSGFEMIDVEG----QKFRVLLGTNPDEVALWRAERRKNWPSRDNISRKDTEAEKRRSLGDLGP 1243
            C+ C K+F S  AR AHL+SH PCP  GC+F A +KV++ H    HG  SG+G+  I+VE     QKFRVL+GT+P+EVA WRAERRKNWPS+ N++RK  E  +RRS G L P
Sbjct:   60 CEACDKEFSSASARDAHLRSHTPCPHPGCSFAASQKVVNAHFEVAHGQFSGTGYREIEVEVGNRMQKFRVLMGTSPEEVAQWRAERRKNWPSKTNLARKSAEQHERRSRGSLDP 173          
BLAST of mRNA_C-tenellus_contig6561.4.1 vs. uniprot
Match: A0A1V9Z0Q3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z0Q3_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.380e-25
Identity = 52/108 (48.15%), Postives = 74/108 (68.52%), Query Frame = 2
Query:  914 CKPCGKKFVSEDARQAHLKSHVPCPESGCNFTAVRKVMSGHHASVHGHLSGSGFEMIDVEGQKFRVLLGTNPDEVALWRAERRKNWPSRDNISRKDTEAEKRRSLGDL 1237
            C+PC K F  +   +AH+ +H  C E GC+F A ++V++ HHA+VHG  +GSG + I+VEGQKF VL+G +P+E+A WR ERRK WPS   + RK  + E+R   GD+
Sbjct:  203 CEPCDKHFALKSQHEAHMNTHESCWEPGCDFRACKRVVTAHHATVHGQFAGSGLKEIEVEGQKFTVLVGNSPEEIAKWREERRKKWPSTAVVKRKLEQTEERMLAGDI 310          
BLAST of mRNA_C-tenellus_contig6561.4.1 vs. uniprot
Match: A0A2D4C9T5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9T5_PYTIN)

HSP 1 Score: 110 bits (275), Expect = 1.530e-23
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 2
Query:  914 CKPCGKKFVSEDARQAHLKSHVPCPESGCNFTAVRKVMSGHHASVHGHLSGSGFEMIDVEGQKFRVLLGTNPDEVALWRAERRKNWPS 1177
            C+PC K F  E    AHLK+HV CP   C+F+A ++V++ HH + HG  +GSG + I+VEGQ+F VL+G +P+++  WRAERRK WPS
Sbjct:    5 CEPCDKTFPIESQHAAHLKTHVSCPAPDCSFSASKRVVTVHHQTSHGQFAGSGLKEIEVEGQRFMVLVGNSPEDIEKWRAERRKRWPS 92          
BLAST of mRNA_C-tenellus_contig6561.4.1 vs. uniprot
Match: A0A1W0ABE8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABE8_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.630e-23
Identity = 52/108 (48.15%), Postives = 72/108 (66.67%), Query Frame = 2
Query:  914 CKPCGKKFVSEDARQAHLKSHVPCPESGCNFTAVRKVMSGHHASVHGHLSGSGFEMIDVEGQKFRVLLGTNPDEVALWRAERRKNWPSRDNISRKDTEAEKRRSLGDL 1237
            C+PC K F  +    AHL +H  C E  C+F+A ++V++ HH +VHG  +GSG + IDVEGQKF VL+G +P+++A WR ERRK WPS   + RK  E E+R   GD+
Sbjct:  669 CEPCDKHFPYKSQYDAHLNTHESCWEPNCDFSACKRVVTSHHQTVHGQFAGSGLKEIDVEGQKFTVLVGNSPEDIAKWREERRKKWPSTSVVKRKMEENEERIRAGDV 776          
BLAST of mRNA_C-tenellus_contig6561.4.1 vs. uniprot
Match: W4FQN8_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQN8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.340e-23
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  914 CKPCGKKFVSEDARQAHLKSHVPCPESGCNFTAVRKVMSGHHASVHGHLSGSGFEMIDVEGQKFRVLLGTNPDEVALWRAERRKNWPSRDNISRKDTEAEKRRSLGDL 1237
            C+PC K F  +    AH+ +H  C   GC+F+A ++V++ HH + HG  +GSG + I+VEGQKF VL+G +P+++  WR ERRK WPS  N+ RK+ + + R   GD+
Sbjct:  232 CEPCEKHFAMKSQFDAHVLTHEACWAPGCDFSASKRVVTSHHQTAHGQYAGSGLKEIEVEGQKFHVLVGNSPEDITKWREERRKKWPSDANVKRKNDQHQDRVQAGDV 339          
BLAST of mRNA_C-tenellus_contig6561.4.1 vs. uniprot
Match: A0A024T851_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T851_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.080e-22
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  911 ECKPCGKKFVSEDARQAHLKSHVPCPESGCNFTAVRKVMSGHHASVHGHLSGSGFEMIDVEGQKFRVLLGTNPDEVALWRAERRKNWPSRDNISRKDTEAEKRRSLGDL 1237
            +C+PC K F  +    AH+ +H  C   GC+F+A ++V++ H+  +HG  +GSG + I+VEGQKF+VL+G +P+E+  WR ERRK WPS  N+ RK+ +  +R   GD+
Sbjct:  233 QCEPCEKHFAMKSQYDAHMLTHEQCWAPGCDFSASKRVVTSHYQVMHGQYAGSGLKEIEVEGQKFQVLVGNSPEEITKWREERRKKWPSESNVKRKNEQMGERVQAGDI 341          
BLAST of mRNA_C-tenellus_contig6561.4.1 vs. uniprot
Match: A0A8K1CJ96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJ96_PYTOL)

HSP 1 Score: 112 bits (279), Expect = 2.990e-22
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  914 CKPCGKKFVSEDARQAHLKSHVPCPESGCNFTAVRKVMSGHHASVHGHLSGSGFEMIDVEGQKFRVLLGTNPDEVALWRAERRKNWPSRDNISRK 1198
            C+ C K F  E    AHLK+HVPCP   C F+A ++V+  H  + HG  +G G + IDVEGQKF VL+G +P+++A WRAERRK WPS   +++K
Sbjct:  393 CEACEKSFAIESQHVAHLKTHVPCPSPDCEFSASKRVVGAHFQTAHGQYAGQGLKEIDVEGQKFMVLVGNSPEDIAKWRAERRKRWPSNALVNQK 487          
BLAST of mRNA_C-tenellus_contig6561.4.1 vs. uniprot
Match: W4FR42_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR42_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.440e-22
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  914 CKPCGKKFVSEDARQAHLKSHVPCPESGCNFTAVRKVMSGHHASVHGHLSGSGFEMIDVEGQKFRVLLGTNPDEVALWRAERRKNWPSRDNISRKDTEAEKRRSLGDL 1237
            C+PC K F  +    AH+ +H  C   GC+F+A ++V++ HH + HG  +GSG + I+VEGQKF VL+G +P+++  WR ERRK WPS  N+ RK+ + + R   GD+
Sbjct:  232 CEPCEKHFAMKSQFDAHVLTHEACWAPGCDFSASKRVVTSHHQTAHGQYAGSGLKEIEVEGQKFHVLVGNSPEDITKWREERRKKWPSDANVKRKNDQHQDRVQAGDV 339          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6561.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLR5_9PHAE4.270e-4368.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK97_ECTSI1.890e-4247.34Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S2RYE8_9STRA6.480e-3155.26Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1V9Z0Q3_9STRA1.380e-2548.15Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2D4C9T5_PYTIN1.530e-2351.14Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1W0ABE8_9STRA1.630e-2348.15Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W4FQN8_9STRA7.340e-2343.52C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
A0A024T851_9STRA1.080e-2243.12Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A8K1CJ96_PYTOL2.990e-2249.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4FR42_9STRA3.440e-2243.52Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6561contigC-tenellus_contig6561:4016..7186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FK97
Preferred nameZC3H6
PFAMszf-CCCH,zf-CCCH_2
Model size1657
Max annot lvl2759|Eukaryota
KEGG koko:K20915
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000785,GO:0000976,GO:0000977,GO:0000981,GO:0001012,GO:0001067,GO:0001161,GO:0001162,GO:0001227,GO:0001776,GO:0002260,GO:0002376,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006359,GO:0006366,GO:0006383,GO:0006401,GO:0006725,GO:0006807,GO:0007162,GO:0008023,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0015030,GO:0016070,GO:0016073,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022407,GO:0022408,GO:0030155,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033081,GO:0033085,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035327,GO:0035363,GO:0042221,GO:0042592,GO:0042795,GO:0042796,GO:0042981,GO:0043029,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044213,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045619,GO:0045620,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045945,GO:0046483,GO:0046677,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051241,GO:0051249,GO:0051250,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070228,GO:0070230,GO:0070232,GO:0070234,GO:0070243,GO:0070245,GO:0071025,GO:0071027,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902105,GO:1902106,GO:1902679,GO:1902680,GO:1903037,GO:1903038,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1990837,GO:2000026,GO:2000106,GO:2000108,GO:2000112,GO:2000113,GO:2001141
Exons3
Evalue2.9e-43
EggNOG OGsCOG5084@1|root,KOG1040@2759|Eukaryota
Descriptionpre-mRNA cleavage required for polyadenylation
Cds size1644
COG categoryL
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789976.9234052-UTR-C-tenellus_contig6561:4015..40281680789976.9234052-UTR-C-tenellus_contig6561:4015..4028Choristocarpus tenellus KU2346UTRC-tenellus_contig6561 4016..4028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789976.935939-CDS-C-tenellus_contig6561:4028..50931680789976.935939-CDS-C-tenellus_contig6561:4028..5093Choristocarpus tenellus KU2346CDSC-tenellus_contig6561 4029..5093 +
1680789976.9485228-CDS-C-tenellus_contig6561:5518..56341680789976.9485228-CDS-C-tenellus_contig6561:5518..5634Choristocarpus tenellus KU2346CDSC-tenellus_contig6561 5519..5634 +
1680789976.9588192-CDS-C-tenellus_contig6561:6723..71861680789976.9588192-CDS-C-tenellus_contig6561:6723..7186Choristocarpus tenellus KU2346CDSC-tenellus_contig6561 6724..7186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6561.4.1prot_C-tenellus_contig6561.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6561 4029..7186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6561.4.1

>prot_C-tenellus_contig6561.4.1 ID=prot_C-tenellus_contig6561.4.1|Name=mRNA_C-tenellus_contig6561.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=548bp
MSHDRLNYEMMNQNQGRSHIHGQGIINPIGPPPIGHFQVQQQQQQHHPPP
HLQHHVHGDFSQTSPQHHSYGYHQQYPFYPPGSRVGTDSSSYRQSMMGHV
EPLPQGPPQPSGLSHHHPQQWLVSQPQGQSYDYAPPPPAGIYSPVDASQG
HRAGGQCEGPWHRPCPNRFKSAIPRRSSSGGDGFFGPSEAPTNVRACEQS
GGPWHWPCPSRSSSGTADPLTDKSSKILAARAGQTDVLRGGDISRQVVGT
PKQERGTTKKGNGDTGFGREGVEVRSATQTAEVGTYEGAAKESAMIVAAE
CKPCGKKFVSEDARQAHLKSHVPCPESGCNFTAVRKVMSGHHASVHGHLS
GSGFEMIDVEGQKFRVLLGTNPDEVALWRAERRKNWPSRDNISRKDTEAE
KRRSLGDLGPDLGPSGRRKGGKNRDVRSSRSQRGGRGRGRGRGRGGRHEA
RGYTEPYGNDRENQIGGLPPALVAKIEMLGKEQARGGGQQEEPLGSAVVE
SGSIKNMGEQAGGGKSGGMGVDGSLDTEGAVGSEVKATVLGVEAAEAV
back to top

mRNA from alignment at C-tenellus_contig6561:4016..7186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6561.4.1 ID=mRNA_C-tenellus_contig6561.4.1|Name=mRNA_C-tenellus_contig6561.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3171bp|location=Sequence derived from alignment at C-tenellus_contig6561:4016..7186+ (Choristocarpus tenellus KU2346)
AATCGAAGAAAAGATGAGCCACGACCGATTAAACTACGAAATGATGAACC AAAATCAGGGCCGATCCCATATCCATGGACAGGGTATCATAAATCCAATA GGTCCTCCGCCAATAGGCCATTTCCAGGTGCAGCAGCAGCAACAGCAACA CCACCCACCACCCCATCTCCAGCACCATGTTCATGGTGACTTTTCTCAAA CCTCACCTCAACATCATAGCTACGGCTACCACCAACAGTACCCTTTTTAT CCACCAGGTTCCAGGGTAGGGACCGATAGCAGTTCATATCGGCAGTCAAT GATGGGGCATGTTGAACCTCTACCGCAAGGGCCACCCCAACCTTCCGGAC TTTCGCATCATCATCCACAGCAGTGGTTGGTCAGCCAGCCGCAAGGTCAG TCATACGATTATGCACCACCTCCACCAGCTGGGATATACTCCCCTGTCGA TGCTAGTCAAGGTCACAGGGCGGGTGGACAATGTGAGGGACCTTGGCACA GGCCATGCCCGAATAGGTTCAAATCAGCGATCCCTAGACGCTCCTCAAGC GGGGGAGATGGGTTCTTTGGGCCCAGCGAAGCTCCGACAAATGTACGAGC TTGCGAGCAATCCGGGGGACCATGGCATTGGCCATGTCCAAGTCGGTCCT CGTCAGGGACCGCTGACCCCCTGACAGACAAAAGTAGCAAGATCCTCGCA GCAAGGGCAGGTCAAACAGATGTCTTGAGGGGGGGAGATATTAGCCGTCA GGTGGTAGGTACTCCTAAACAAGAGAGAGGAACTACGAAGAAAGGCAATG GCGATACCGGTTTCGGGCGTGAGGGGGTAGAAGTACGATCCGCGACCCAA ACTGCAGAGGTAGGGACCTATGAGGGAGCGGCAAAGGAGAGTGCGATGAT AGTGGCCGCGGAGTGCAAGCCATGCGGGAAGAAATTCGTGTCAGAAGATG CCCGACAGGCCCACCTCAAGTCCCACGTTCCATGCCCCGAAAGTGGTTGT AATTTTACGGCCGTCCGGAAGGTTATGTCAGGTCATCATGCCTCTGTACA CGGTCACTTGAGTGGGTCGGGATTCGAGGTGAGATCAGAGTTTCAGCAGG CATTGCAATGGCACACAATAAACGGTGGACTCAAAGGTGTGTAATTCTTT GGATGACCAGAAAATACGTTAATTGCACACAATGTTCCAGATACCTTGCT ACAACAATATTACTGTGCGACTTCATCTTTTCTGACCTCAGGAGGTGGTA TTGTATTATGCATGAGCTTCTGGCTTCCCATGCTCGTCCCCTTGCTTGAC ACTGTGCGCACGTTACATTTCGGTTTATAACCTTTGATGTGTTGAATGGT GCAATCTATGTCAGATATATTCTCGCAGTCCATGCATGGGACAGGGTTTT TGTTTTTCTCCAGTGAGTAGCTTCAACTGTTATACACACATGGACACGAA CATTCAGGCCTTCATACATGATGCTTGACCTGCTATGATTGCGTTATCTC CAGATGATTGATGTGGAGGGGCAAAAGTTTCGAGTGCTGCTGGGAACGAA CCCTGATGAGGTGGCCTTGTGGAGGGCAGAGAGGCGAAAAAATTGGCCTT CAAGAGATAACATTTCCAGGTTCTGCCAATCCCTAACCCTAACCATACAA AAAAAAAAAAGACCCAGTTGATTGTCCGTTGTGCTCCAGTAGAGCATGTG TCGCACCATGAGAGACGAGAACGTCTTGCGTGATAGTTCAGCTGTTCACA GTGATCTTGTTCCTGTCTCTTTTCTTGCTTGTGTCAAATTGTTGTTTTGA TGTGATCTCCTTCTTCAATTTTTTTTTTTCAATTTTTGTGTGCGTGTGTG TGTGTGCTCTTGAAGACATCGATTGGTAATGTCGTGGAGTGCCTGCTGCT GAAGTTGTTGTCAGGCTGAAGTCTGAAAGTTTGCCATAGTTTAAGCCACA GTATGTATGTCCACAACCAGCATATGTTCGTTTTGTCGATCGAGGTATAT GCAGTTGGTTTTTGTGGCAGTCTGTTGCAGCAGTCAATCATCACATGTAA TTTGAGTTTGTTTTTTTCTATTCCTTCGTATCTGATCCGTTGTCTGGAAC AGACTAAACTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCTCCCTCTTTCTTTCTTTCTTTTCCTCNNNNNNNNNNCGCCT TTTCCTTCCTTTCCTATCTGTTCCGTTGTCCGGAACAACCCAACCTGCCC CCCCCCCCCCCCCCACCCTCCGCCCCCCGCCCCCCCTAACATTTTGTTTT GTATTTGCATTTGTTCATGTTTGTTTTTGTTTGTTTTTACTCGTTCATTT AAGGATGTAACTGTTAAAGTAACGCCCATACAGCATCACATGGCTGAGTA CGTTGAAAGAGTTGTGCTTCACATAGGTGGTGTATACACACGCCCCAACA GATTGCGCATGTAAACCAAAAACATGTTTTGTTTTGTTTTTTTAACAGAA GGTTAATTGCTACGAGGTCAGCGTTGGGCGTATGCCCCCCCCCCCCTCAC CCACCCACCCATGATTCCTTTCTCTTCCCTTCTCTCCCCTTATTCTCCTT GTTTCTGTCCTATATAACTTAACCCTTAATCCCCCAACTCCATCCGACCC ATCCGACCTATCCGTTGCGTTCTGCCTTCTGCCTTCTGCGTTCTCGGTTG ACTCACAGAAAAGACACCGAGGCTGAAAAGCGTCGGAGTCTTGGGGACCT TGGTCCAGACCTGGGACCAAGTGGCCGGCGCAAGGGAGGCAAGAACCGAG ACGTTAGAAGTTCTAGGTCCCAGCGCGGGGGCAGGGGCAGGGGCAGGGGC AGGGGCAGAGGAGGCAGACATGAGGCGAGGGGATACACTGAACCGTACGG TAACGACAGGGAGAACCAAATAGGAGGCCTTCCACCTGCCTTGGTGGCGA AGATAGAGATGTTGGGAAAAGAACAGGCAAGGGGTGGAGGGCAACAGGAG GAGCCTTTGGGAAGTGCTGTTGTTGAGTCGGGGTCTATTAAAAACATGGG GGAACAGGCCGGCGGTGGGAAAAGTGGAGGGATGGGGGTTGATGGCAGCC TCGACACTGAAGGAGCAGTTGGTTCTGAAGTGAAAGCTACTGTATTGGGG GTGGAGGCGGCGGAAGCGGTG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig6561:4016..7186+

>mRNA_C-tenellus_contig6561.4.1 ID=mRNA_C-tenellus_contig6561.4.1|Name=mRNA_C-tenellus_contig6561.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1644bp|location=Sequence derived from alignment at C-tenellus_contig6561:4016..7186+ (Choristocarpus tenellus KU2346)
ATGAGCCACGACCGATTAAACTACGAAATGATGAACCAAAATCAGGGCCG
ATCCCATATCCATGGACAGGGTATCATAAATCCAATAGGTCCTCCGCCAA
TAGGCCATTTCCAGGTGCAGCAGCAGCAACAGCAACACCACCCACCACCC
CATCTCCAGCACCATGTTCATGGTGACTTTTCTCAAACCTCACCTCAACA
TCATAGCTACGGCTACCACCAACAGTACCCTTTTTATCCACCAGGTTCCA
GGGTAGGGACCGATAGCAGTTCATATCGGCAGTCAATGATGGGGCATGTT
GAACCTCTACCGCAAGGGCCACCCCAACCTTCCGGACTTTCGCATCATCA
TCCACAGCAGTGGTTGGTCAGCCAGCCGCAAGGTCAGTCATACGATTATG
CACCACCTCCACCAGCTGGGATATACTCCCCTGTCGATGCTAGTCAAGGT
CACAGGGCGGGTGGACAATGTGAGGGACCTTGGCACAGGCCATGCCCGAA
TAGGTTCAAATCAGCGATCCCTAGACGCTCCTCAAGCGGGGGAGATGGGT
TCTTTGGGCCCAGCGAAGCTCCGACAAATGTACGAGCTTGCGAGCAATCC
GGGGGACCATGGCATTGGCCATGTCCAAGTCGGTCCTCGTCAGGGACCGC
TGACCCCCTGACAGACAAAAGTAGCAAGATCCTCGCAGCAAGGGCAGGTC
AAACAGATGTCTTGAGGGGGGGAGATATTAGCCGTCAGGTGGTAGGTACT
CCTAAACAAGAGAGAGGAACTACGAAGAAAGGCAATGGCGATACCGGTTT
CGGGCGTGAGGGGGTAGAAGTACGATCCGCGACCCAAACTGCAGAGGTAG
GGACCTATGAGGGAGCGGCAAAGGAGAGTGCGATGATAGTGGCCGCGGAG
TGCAAGCCATGCGGGAAGAAATTCGTGTCAGAAGATGCCCGACAGGCCCA
CCTCAAGTCCCACGTTCCATGCCCCGAAAGTGGTTGTAATTTTACGGCCG
TCCGGAAGGTTATGTCAGGTCATCATGCCTCTGTACACGGTCACTTGAGT
GGGTCGGGATTCGAGATGATTGATGTGGAGGGGCAAAAGTTTCGAGTGCT
GCTGGGAACGAACCCTGATGAGGTGGCCTTGTGGAGGGCAGAGAGGCGAA
AAAATTGGCCTTCAAGAGATAACATTTCCAGAAAAGACACCGAGGCTGAA
AAGCGTCGGAGTCTTGGGGACCTTGGTCCAGACCTGGGACCAAGTGGCCG
GCGCAAGGGAGGCAAGAACCGAGACGTTAGAAGTTCTAGGTCCCAGCGCG
GGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGAGGAGGCAGACATGAGGCG
AGGGGATACACTGAACCGTACGGTAACGACAGGGAGAACCAAATAGGAGG
CCTTCCACCTGCCTTGGTGGCGAAGATAGAGATGTTGGGAAAAGAACAGG
CAAGGGGTGGAGGGCAACAGGAGGAGCCTTTGGGAAGTGCTGTTGTTGAG
TCGGGGTCTATTAAAAACATGGGGGAACAGGCCGGCGGTGGGAAAAGTGG
AGGGATGGGGGTTGATGGCAGCCTCGACACTGAAGGAGCAGTTGGTTCTG
AAGTGAAAGCTACTGTATTGGGGGTGGAGGCGGCGGAAGCGGTG
back to top