mRNA_C-tenellus_contig10142.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10142.1.1
Unique NamemRNA_C-tenellus_contig10142.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10142.1.1 vs. uniprot
Match: A0A6H5JSZ1_9PHAE (MCM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ1_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.240e-16
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 QGTVIRTGNIKMLEVSRDYQCKNKTCSVVFSVRSDMSQGNLLVPPVS 141
            QGTVIR+G  KMLEVSR+Y+C+NKTC  VFSV SDMSQGNLL PP S
Sbjct:   38 QGTVIRSGAAKMLEVSREYRCQNKTCGAVFSVHSDMSQGNLLAPPTS 84
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BLAST of mRNA_C-tenellus_contig10142.1.1 vs. uniprot
Match: D7G551_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G551_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 9.110e-16
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 QGTVIRTGNIKMLEVSRDYQCKNKTCSVVFSVRSDMSQGNLLVPPVS 141
            QGTVIR+G  KMLEVSR+Y+C+NKTC  VFSV SDMSQGNLL PP S
Sbjct:   81 QGTVIRSGAAKMLEVSREYRCQNKTCGAVFSVHSDMSQGNLLAPPTS 127
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BLAST of mRNA_C-tenellus_contig10142.1.1 vs. uniprot
Match: D8LM73_ECTSI (MCM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM73_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 9.170e-16
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 QGTVIRTGNIKMLEVSRDYQCKNKTCSVVFSVRSDMSQGNLLVPPVS 141
            QGTVIR+G  KMLEVSR+Y+C+NKTC  VFSV SDMSQGNLL PP S
Sbjct:  134 QGTVIRSGAAKMLEVSREYRCQNKTCGAVFSVHSDMSQGNLLAPPTS 180
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BLAST of mRNA_C-tenellus_contig10142.1.1 vs. uniprot
Match: A0A482RXB6_9ARCH (Minichromosome maintenance protein MCM (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXB6_9ARCH)

HSP 1 Score: 50.1 bits (118), Expect = 1.370e-5
Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    4 GTVIRTGNIKMLEVSRDYQCKNKTCSVVFSVRSDMSQGNLLVPP 135
            GTV+RTG ++MLE+SR Y+C+N  C   FSV +D+ +   +  P
Sbjct:  139 GTVVRTGGVRMLELSRQYECQNARCRHRFSVFADLEENGAIPQP 182
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BLAST of mRNA_C-tenellus_contig10142.1.1 vs. uniprot
Match: A0A7S3ZT70_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT70_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.900e-5
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 QGTVIRTGNIKMLEVSRDYQCKNKTCSVVFSVRSDMSQGNLLVPP 135
            +GTV+RTG +++LE  R Y+C ++ C  VF V+ D +QGN+   P
Sbjct:  192 EGTVVRTGAVRVLEAQRWYRCLDQRCEHVFPVKPDAAQGNVFEAP 236
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10142.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JSZ1_9PHAE3.240e-1676.60MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G551_ECTSI9.110e-1676.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LM73_ECTSI9.170e-1676.60MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A482RXB6_9ARCH1.370e-545.45Minichromosome maintenance protein MCM (Fragment) ... [more]
A0A7S3ZT70_9STRA1.900e-544.44Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10142contigC-tenellus_contig10142:49..219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G551
Model size171
Max annot lvl2880.D7G551|-
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.49e-16
EggNOG OGsCOG1241@1|root,KOG0477@2759|Eukaryota
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-18_002740.1
Descriptionnegative regulation of DNA helicase activity
Cds size171
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789117.5611482-CDS-C-tenellus_contig10142:48..2191680789117.5611482-CDS-C-tenellus_contig10142:48..219Choristocarpus tenellus KU2346CDSC-tenellus_contig10142 49..219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10142.1.1prot_C-tenellus_contig10142.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10142 49..219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10142.1.1

>prot_C-tenellus_contig10142.1.1 ID=prot_C-tenellus_contig10142.1.1|Name=mRNA_C-tenellus_contig10142.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=57bp
QGTVIRTGNIKMLEVSRDYQCKNKTCSVVFSVRSDMSQGNLLVPPVSERG
EEKKKRE
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mRNA from alignment at C-tenellus_contig10142:49..219-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10142.1.1 ID=mRNA_C-tenellus_contig10142.1.1|Name=mRNA_C-tenellus_contig10142.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=171bp|location=Sequence derived from alignment at C-tenellus_contig10142:49..219- (Choristocarpus tenellus KU2346)
CAGGGAACGGTGATCCGTACCGGAAACATCAAGATGCTGGAGGTGTCACG
GGACTATCAGTGCAAGAACAAGACGTGCAGTGTTGTGTTCAGCGTGCGCT
CCGACATGAGTCAGGGGAACCTCCTTGTGCCACCTGTGAGTGAGCGTGGG
GAGGAGAAAAAAAAAAGAGAA
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Coding sequence (CDS) from alignment at C-tenellus_contig10142:49..219-

>mRNA_C-tenellus_contig10142.1.1 ID=mRNA_C-tenellus_contig10142.1.1|Name=mRNA_C-tenellus_contig10142.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=171bp|location=Sequence derived from alignment at C-tenellus_contig10142:49..219- (Choristocarpus tenellus KU2346)
CAGGGAACGGTGATCCGTACCGGAAACATCAAGATGCTGGAGGTGTCACG
GGACTATCAGTGCAAGAACAAGACGTGCAGTGTTGTGTTCAGCGTGCGCT
CCGACATGAGTCAGGGGAACCTCCTTGTGCCACCTGTGAGTGAGCGTGGG
GAGGAGAAAAAAAAAAGAGAA
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