prot_C-tenellus_contig10141.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10141.1.1
Unique Nameprot_C-tenellus_contig10141.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length293
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10141.1.1 vs. uniprot
Match: A0A6H5L4W1_9PHAE (PARP-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.790e-27
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 0 
Query:  189 VNPWNELDDDAYLVGYSPK-GTTVCGVCGHKVAKGKLQMGIFYAHKHKFTLVKWHHLHCILPPTCFTCPMDLCGFEDIRGEDVDTVQRWLGFESDGVARDRANT 291
            +NPW EL  + +++GY+   G   C  CG K++ G+LQ+G FY H+ +FTL++WHH  C+  P C T PMDLCG ED+  EDVD V RWL     G  +DR  T
Sbjct:   64 LNPWKELAPEDFVIGYARGLGRVRCSSCGCKISAGQLQLGAFYMHEDRFTLLRWHHQSCVDAPECLTSPMDLCGIEDLSPEDVDEVCRWLAHGRSGPVKDRTWT 167
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10141.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4W1_9PHAE3.790e-2747.12PARP-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001510Zinc finger, PARP-typeSMARTSM01336zf_PARP_3coord: 203..278
e-value: 4.4E-5
score: 32.9
IPR001510Zinc finger, PARP-typePROSITEPS50064PARP_ZN_FINGER_2coord: 200..277
score: 10.924
IPR036957Zinc finger, PARP-type superfamilyGENE3D3.30.1740.10coord: 193..289
e-value: 1.6E-9
score: 40.0
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 199..277

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10141contigC-tenellus_contig10141:1695..2829 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10141.1.1mRNA_C-tenellus_contig10141.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10141 1634..3965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10141.1.1 ID=prot_C-tenellus_contig10141.1.1|Name=mRNA_C-tenellus_contig10141.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=293bp
MFSGRDREDSFQRSLVSNLTKEGLMSPLSDADLPMVDTSTVKVPTSPSTT
APTIPASPATVAPTFSDVDAGSFNSASGKIQTTHNGDLLVPYFDFRSGAA
ALVEDEDECTLSSAVAPVTTVTVNTNDSRNKIESPDSETVVLEVKPYPER
DVAITRGVAEGRGKRPQNSPASPRVKAVTTMDRPPASEVNPWNELDDDAY
LVGYSPKGTTVCGVCGHKVAKGKLQMGIFYAHKHKFTLVKWHHLHCILPP
TCFTCPMDLCGFEDIRGEDVDTVQRWLGFESDGVARDRANTL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001510Znf_PARP
IPR036957Znf_PARP_sf