mRNA_C-tenellus_contig10141.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10141.1.1
Unique NamemRNA_C-tenellus_contig10141.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10141.1.1 vs. uniprot
Match: A0A6H5L4W1_9PHAE (PARP-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W1_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.750e-26
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 2 
Query:  626 VNPWNELDDDAYLVGYSPK-GTTVCGVCGHKVAKGKLQMGIFYAHKHKFTLVKWHHLHCILPPTCFTCPMDLCGFEDIRGEDVDTVQRWLGFESDGVARDRANT 934
            +NPW EL  + +++GY+   G   C  CG K++ G+LQ+G FY H+ +FTL++WHH  C+  P C T PMDLCG ED+  EDVD V RWL     G  +DR  T
Sbjct:   64 LNPWKELAPEDFVIGYARGLGRVRCSSCGCKISAGQLQLGAFYMHEDRFTLLRWHHQSCVDAPECLTSPMDLCGIEDLSPEDVDEVCRWLAHGRSGPVKDRTWT 167
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10141.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4W1_9PHAE2.750e-2647.12PARP-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10141contigC-tenellus_contig10141:1634..3965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000019231
PFAMszf-PARP
Model size2076
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.48e-06
EggNOG OGs2CYSJ@1|root,2S654@2759|Eukaryota,1MHW9@121069|Pythiales
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_004740.2
Descriptionfunction. Source PGD
Cds size879
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789117.4987597-UTR-C-tenellus_contig10141:1633..16941680789117.4987597-UTR-C-tenellus_contig10141:1633..1694Choristocarpus tenellus KU2346UTRC-tenellus_contig10141 1634..1694 +
1680789117.534018-UTR-C-tenellus_contig10141:2829..39651680789117.534018-UTR-C-tenellus_contig10141:2829..3965Choristocarpus tenellus KU2346UTRC-tenellus_contig10141 2830..3965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789117.5112417-CDS-C-tenellus_contig10141:1694..23691680789117.5112417-CDS-C-tenellus_contig10141:1694..2369Choristocarpus tenellus KU2346CDSC-tenellus_contig10141 1695..2369 +
1680789117.5224128-CDS-C-tenellus_contig10141:2625..28291680789117.5224128-CDS-C-tenellus_contig10141:2625..2829Choristocarpus tenellus KU2346CDSC-tenellus_contig10141 2626..2829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10141.1.1prot_C-tenellus_contig10141.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10141 1695..2829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10141.1.1

>prot_C-tenellus_contig10141.1.1 ID=prot_C-tenellus_contig10141.1.1|Name=mRNA_C-tenellus_contig10141.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=293bp
MFSGRDREDSFQRSLVSNLTKEGLMSPLSDADLPMVDTSTVKVPTSPSTT
APTIPASPATVAPTFSDVDAGSFNSASGKIQTTHNGDLLVPYFDFRSGAA
ALVEDEDECTLSSAVAPVTTVTVNTNDSRNKIESPDSETVVLEVKPYPER
DVAITRGVAEGRGKRPQNSPASPRVKAVTTMDRPPASEVNPWNELDDDAY
LVGYSPKGTTVCGVCGHKVAKGKLQMGIFYAHKHKFTLVKWHHLHCILPP
TCFTCPMDLCGFEDIRGEDVDTVQRWLGFESDGVARDRANTL*
back to top

mRNA from alignment at C-tenellus_contig10141:1634..3965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10141.1.1 ID=mRNA_C-tenellus_contig10141.1.1|Name=mRNA_C-tenellus_contig10141.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2332bp|location=Sequence derived from alignment at C-tenellus_contig10141:1634..3965+ (Choristocarpus tenellus KU2346)
GCATGGTGGTACATCTCACCTTCACAAGTGCACTACTGTTAGTCGCTTTC
AAGTCCAAGTGATGTTCAGTGGAAGGGACCGAGAAGATTCCTTCCAAAGA
AGTCTAGTCTCGAATCTCACGAAAGAGGGGCTGATGTCCCCTTTGTCTGA
TGCAGATCTCCCCATGGTGGACACCTCCACAGTCAAGGTCCCAACGTCGC
CCTCGACAACAGCCCCTACTATTCCAGCTTCGCCGGCAACGGTTGCCCCA
ACTTTCTCTGATGTGGATGCTGGCTCCTTCAATTCGGCATCTGGAAAAAT
CCAGACCACTCACAATGGTGACCTCCTAGTACCGTACTTCGACTTCAGAA
GTGGGGCTGCCGCTCTGGTCGAAGACGAAGATGAATGCACTCTCTCGTCT
GCCGTGGCCCCCGTCACCACGGTCACTGTCAACACCAACGACAGCAGGAA
CAAGATAGAGTCGCCTGACTCGGAGACAGTTGTGTTAGAGGTCAAGCCTT
ACCCTGAGCGAGATGTGGCAATCACCAGAGGTGTGGCGGAAGGGCGTGGC
AAACGGCCTCAAAATTCCCCTGCATCCCCCCGTGTTAAAGCTGTGACTAC
TATGGATCGCCCTCCAGCTTCCGAAGTCAACCCCTGGAATGAGCTAGATG
ATGATGCGTACCTCGTAGGGTACTCGCCTAAGGGGACCACAGTTTGTGGA
GTATGCGGTCACAAGGTGGCCAAAGGAAAGCTTCAGGTAATTCCCCCGCG
TGAGAGTGGTAAGGGTGGGGAAGTGATTGATGGGGCATGTCACCTTGAAC
TGTATCCCATTGCTCGCTTGGTTAAGGTAGGTTATGGTAAAACTCGTAAG
TACCGCGCTGTTGAATTATAAATTGCAGTCGTATACTATAGGACAGGTTG
TCTCTATTCCCTATCTTACCGAAAATGGGTCCAGAAAATTACCGTGCCCA
ACATGTCACTCAATCATTCCCCTTCTACCTTACCGGTTCCAGATGGGAAT
TTTTTATGCACACAAGCACAAGTTTACTCTTGTCAAGTGGCATCATCTCC
ATTGCATTCTGCCACCGACATGCTTCACTTGCCCCATGGATCTCTGCGGC
TTCGAAGACATTCGAGGGGAGGATGTGGACACTGTTCAGCGATGGCTTGG
ATTCGAGTCTGACGGGGTTGCCAGGGATCGTGCCAATACCCTTTGATTCT
GACCTTGGATTTTTTTTTAGTATCAAATCTGTTATCTGGGTTGGAGACCG
GGTTCGAGTATGCATTGTAACACGACTTGCTGTTGTTGGTGTCAAATTAA
TGTTGGTATGTGATCCAATCTCGATTGCTTGCCCTGGTCCCTCCCTATCC
TGCTTGCTGATGTTGCGTTCATATCCTTCACACTTCCTGAACTTGTGGGT
TAGGTTCCCCCTATGTACCCCCTTTCAATATTGTTAAGATATCAGTATTG
TGGGCATGACCTTGAATGTGTTGTATTTGTGGGGTTGCAGGCACATGCTG
AGGTGATCTTAGATTCTTGGTATGGTGTTTTTGTGTTCTGTGTAATCTAT
ATTTACTAGTTGTAGTCTCTGTGATGAGACATCCTGCATTTCTGAAGGGT
TTTGTACAATCTTTTGGATCACCTCTGGAAAATACACCCTACATGTACAT
AGACTGTTCATTTACTGACTGCAGCTGTCCAGCGCAAGGTCATCTTGTAG
CTCACCCCTCTAGATCAGGGGGCCCCGTTCCACATCAGCTTAGCCCTATT
AAAGAGAAAAAAAAGGTTTTGACTGTTTTGTACCAGTTTCAGATTATTTT
GTGTGGAAGTTGTACAGTCCATGGTTGCAGTTGTCACCTCCTTTTCTGCC
ATGTGTGTTTATTGGTTTTAATCTGATGGAATAGCCCCCTCTCATATGGT
GGTGGTACAGTATTGGGAGAGTGTGCTGGACCCAAAGGAATTGATTGTTA
TCCTTCCCTCCATGTCAATATAGAATAGACTTCCAAAACTGCTTTATTTA
TAATCAGAGAATTATTGGAAAAGCAGTCAATATGATCAAGGTTTGAAGGC
AGTTCTTTACTGTTTTTTAACACTGCATACATGAACCATGTCAGTTGTTT
TGTGTTTTGTGAGGAACAGGTTTGAAAGAGAATGGCTCACTCCATGGTTC
CTCACTTCCCTTAGTTGAGAGCATTTTCCTTTCTATGTGTTTCAAGTATT
CCATCATTTCTTTTCATTGAAACAATGATAATGAAGACTTTCTATATATA
ATGAAGAACAGTAGAGTTTATCTGGTCGATCTCATTGGATTTCGTGACAT
TTGTTGCAATGTCTACTGGCTAGTCCACTCGC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10141:1634..3965+

>mRNA_C-tenellus_contig10141.1.1 ID=mRNA_C-tenellus_contig10141.1.1|Name=mRNA_C-tenellus_contig10141.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=879bp|location=Sequence derived from alignment at C-tenellus_contig10141:1634..3965+ (Choristocarpus tenellus KU2346)
ATGTTCAGTGGAAGGGACCGAGAAGATTCCTTCCAAAGAAGTCTAGTCTC
GAATCTCACGAAAGAGGGGCTGATGTCCCCTTTGTCTGATGCAGATCTCC
CCATGGTGGACACCTCCACAGTCAAGGTCCCAACGTCGCCCTCGACAACA
GCCCCTACTATTCCAGCTTCGCCGGCAACGGTTGCCCCAACTTTCTCTGA
TGTGGATGCTGGCTCCTTCAATTCGGCATCTGGAAAAATCCAGACCACTC
ACAATGGTGACCTCCTAGTACCGTACTTCGACTTCAGAAGTGGGGCTGCC
GCTCTGGTCGAAGACGAAGATGAATGCACTCTCTCGTCTGCCGTGGCCCC
CGTCACCACGGTCACTGTCAACACCAACGACAGCAGGAACAAGATAGAGT
CGCCTGACTCGGAGACAGTTGTGTTAGAGGTCAAGCCTTACCCTGAGCGA
GATGTGGCAATCACCAGAGGTGTGGCGGAAGGGCGTGGCAAACGGCCTCA
AAATTCCCCTGCATCCCCCCGTGTTAAAGCTGTGACTACTATGGATCGCC
CTCCAGCTTCCGAAGTCAACCCCTGGAATGAGCTAGATGATGATGCGTAC
CTCGTAGGGTACTCGCCTAAGGGGACCACAGTTTGTGGAGTATGCGGTCA
CAAGGTGGCCAAAGGAAAGCTTCAGATGGGAATTTTTTATGCACACAAGC
ACAAGTTTACTCTTGTCAAGTGGCATCATCTCCATTGCATTCTGCCACCG
ACATGCTTCACTTGCCCCATGGATCTCTGCGGCTTCGAAGACATTCGAGG
GGAGGATGTGGACACTGTTCAGCGATGGCTTGGATTCGAGTCTGACGGGG
TTGCCAGGGATCGTGCCAATACCCTTTGA
back to top