mRNA_C-tenellus_contig11570.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11570.2.1
Unique NamemRNA_C-tenellus_contig11570.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11570.2.1 vs. uniprot
Match: A0A6H5L145_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L145_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 8.540e-38
Identity = 80/137 (58.39%), Postives = 106/137 (77.37%), Query Frame = 2 
Query:  383 LSLQSLSLALCSATNMFGTPSGMSYMSEASVMPGWMDAALQGLQHKRGEVRQMSSALLNNYSLVIANALPS--IAEGKDSDLPDEAAQILFGALDGLEEEKSETVALRRLLAVGRLLRKLGTPGVSLVNEVGFKEQV 787
            LS Q+LS+A+CSA N F T  G  YM+ A VMPGW+D++L GLQH+RGEVRQM SALLNN+SLV+++A+ S   A G   ++ DE  QILFGALDGL++E S+ VALRR+L+VGRL+R  G+   SL+N+VG ++QV
Sbjct:  342 LSAQALSMAMCSAANCFATAGGSEYMARADVMPGWLDSSLAGLQHERGEVRQMCSALLNNFSLVLSDAIASKTAAGGPAVEMSDETTQILFGALDGLQDETSQLVALRRVLSVGRLVRASGSEAASLINDVGLRDQV 478
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11570.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L145_9PHAE8.540e-3858.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11570contigC-tenellus_contig11570:1469..5201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FR46
PFAMsPUB,PUL,Peptidase_C69,Peptidase_C97,UBA
Model size2819
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons3
Evalue5.24e-44
EggNOG OGsKOG0324@1|root,KOG0324@2759|Eukaryota
Ec32 ortholog descriptionPPPDE putative peptidase domain
Ec32 orthologEc-09_003530.1
DescriptionLys63-specific deubiquitinase activity
Cds size585
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.2225237-UTR-C-tenellus_contig11570:1468..34791680789184.2225237-UTR-C-tenellus_contig11570:1468..3479Choristocarpus tenellus KU2346UTRC-tenellus_contig11570 1469..3479 -
1680789184.2660415-UTR-C-tenellus_contig11570:4978..52011680789184.2660415-UTR-C-tenellus_contig11570:4978..5201Choristocarpus tenellus KU2346UTRC-tenellus_contig11570 4979..5201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789184.2324378-CDS-C-tenellus_contig11570:3479..36021680789184.2324378-CDS-C-tenellus_contig11570:3479..3602Choristocarpus tenellus KU2346CDSC-tenellus_contig11570 3480..3602 -
1680789184.241297-CDS-C-tenellus_contig11570:3985..41641680789184.241297-CDS-C-tenellus_contig11570:3985..4164Choristocarpus tenellus KU2346CDSC-tenellus_contig11570 3986..4164 -
1680789184.2562969-CDS-C-tenellus_contig11570:4695..49781680789184.2562969-CDS-C-tenellus_contig11570:4695..4978Choristocarpus tenellus KU2346CDSC-tenellus_contig11570 4696..4978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11570.2.1prot_C-tenellus_contig11570.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11570 3480..4978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11570.2.1

>prot_C-tenellus_contig11570.2.1 ID=prot_C-tenellus_contig11570.2.1|Name=mRNA_C-tenellus_contig11570.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=195bp
MWLCSRCFLSLDCCSVRKYPAPDMCAVNGLVLCNTGNSCIVVIVFILMPC
THCLSLQSLSLALCSATNMFGTPSGMSYMSEASVMPGWMDAALQGLQHKR
GEVRQMSSALLNNYSLVIANALPSIAEGKDSDLPDEAAQILFGALDGLEE
EKSETVALRRLLAVGRLLRKLGTPGVSLVNEVGFKEQVRRLGKW*
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mRNA from alignment at C-tenellus_contig11570:1469..5201-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11570.2.1 ID=mRNA_C-tenellus_contig11570.2.1|Name=mRNA_C-tenellus_contig11570.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3733bp|location=Sequence derived from alignment at C-tenellus_contig11570:1469..5201- (Choristocarpus tenellus KU2346)
GCTGACAATTTTGTGGTATTTGTCATGGTGATGTATGTGTAGTGTAAAAA
AACAGAGGTATGATATCAGAGGCATCAAAACAAATATTGTCAGATGTAGA
AGGTTTTGTTTTCTGTTGACTAGATACAGTGAAGACATGTTTCATCCCTG
GACTGTTATTGTGAGAAGGTATCGCTAGGGTGTATGATAAACAAGAAGCC
AAGAGTTTGATGTTTTTGTGTCAATGTGGCTATGCTCTCGATGTTTTTTG
AGCTTAGATTGCTGCAGTGTGAGGAAGTATCCAGCACCGGACATGTGTGC
TGTAAATGGGCTTGTTCTGTGCAATACTGGTAATAGTTGTATTGTTGTGA
TTGTTTTTATCCTCATGCCATGCACTCATTGCCTCTCCTTGCAGAGTCTC
TCCCTCGCTCTGTGCTCCGCCACCAATATGTTTGGAACTCCTTCTGGGAT
GTCATACATGTCCGAGGCAAGCGTCATGCCCGGATGGATGGATGCTGCTC
TGCAGGGTGAGGTTTTGTATTGGTATGCAGTGCTTTTTAATGTGCAGATG
GTGGTTGGTGTGAACCTTGTGAGGATGTTGAAATGCAGGCAGTAAGTTTT
CCATTCCAGAAGTGCAATAATTTTGGAACGGTTGGTGAGGGACTATGTGT
GTGTGAGTGGTAGAACCAACTCTTGCGTGGAGCATTTGCTGTTTTTTGGA
AATGTGGGTACAGTGTTGTCGGTAGATGGAGATCGTGATGCAATGGCCCC
TCCCAATTGCCGAAGGCCATGAGATGGGTCATAAAAAGGAGAGCAATAGA
GTTAGGGTTAGTCTTGCAATAGTCACTCTCCCCTACAGTGTAGACACCTA
ATCCTCATGGAGGTCTTGAAGCAGATACGATACCGTGTTGATCTATGATA
ATATATATATACCGTAAGTCACACTCTTCCTCCTCTTTCACACAATGCCA
TCAAACTGGATCATAGGCACCAAGGCATGCATTTTATCGCGCACTCCTTT
CTCATTTTGACCTTGTCATGTAATGCACCTCACACAGGCTTGCAGCACAA
GCGAGGGGAGGTGCGCCAAATGTCTTCAGCTCTGTTGAATAATTACTCTC
TGGTAATTGCCAATGCCCTCCCGAGCATAGCTGAAGGGAAGGACAGTGAT
CTCCCAGATGAGGCCGCCCAGATCTTGTTTGGGGCCTTGGATGGGCTTGA
GGAAGAGAAGTCGGAGGTGAGGGTGAGATTGCTTGCTTGCTTGCTTGCTT
GCTTGCTTGCTTGCTTGTTTGCTTGTAGGTAAAGCATGTGGAGGAAGCAA
TTAACTTAATTGACATTAGTCTTGAAGAGAAGAAGAGAAATTGTGATGTG
GATCTCGAGAAAAGCGTTTGTCTCGGGGAGTTTTCAGGGTTTTTTTTTTC
TGATTCAATTAATTTATGATGAACACAATGCAGTGGGGAGATTCTGTTGG
AGCTAGGTGTACTACTTGTGTCCGTTCCTTCAAACACAAGTTTTTGCTGA
GCAGTCCTCTTTCCTGCAGAGTTGCGGGTGACAATGTATACCATGGACCC
TTGGCTGCTTTCATGCTGTTCGCCCCTGTTTGTGTTTTTCCTCCTCCAGA
CAGTTGCCCTTAGACGACTTCTGGCAGTGGGACGCTTATTGAGGAAGCTT
GGGACACCAGGTGTGTCCCTTGTGAATGAGGTTGGCTTCAAGGAACAGGT
GAGACGCTTGGGCAAGTGGTGACCCCCACTGTTGAGGTGAACATGTCGGC
CTCAAGTGCAACTTGCAGGCTCTCTGGCATGACTGCACAATCTGTAGGGA
CGGTAGCCTATTTTTCTATTAGGTTTGTAGTATTCCACCACCACCACTAC
CCTCACCCCCTCTTTCCAACATGCTCCCGAGGAACAAGGAGTTGTTTGTG
GTTGCCTTGTGAAGAGATCGTGGTTTGCCCATGTAAGATGTTGAAAGTGG
AGGGAGTTGGTTACAACCTGGAAGTTGTAGTTACAACCTGACAGGTTTGG
GGTCTGGTTGGTAGATTAACAAACTGGAGATTGCTCAATATTGATGTCCC
AAACACTGAATACCCATGCAAACAAAAATGAAATGTCTCTGTTTGAAGAA
TGAATAGGATTAGATTGTCAGAACCGGTGGTAGCAGTGTTGGGAAGAGTA
GACTACTGCTGTGCCTCTAAGGCCGGACTTTGGTTTAGACACTCACGAAG
TGGAGAAGTCATGGTATTGGTCTTTGTCCGAGAGTGCCATTTGTGATAAA
ATTGGTCTGTGCACCAGGCCCCAGCTGATTGGACAGTGGCCATGAAGGCG
GTTGCTGTTATGTCTCTGTTTAGATTGGCGTCAGGGGTGTTGAAGTTTAT
ATGTGTCATTAGCTATTGCTCTGCTCAATATATGTGTACAGGGTAGTTCA
TCCATAGCATGAATACCAAGTTTTTTGTAGGCGTGGTGTAATCTGTATTA
TTGTAAACAAGGACCCCCCCTGATGCATTTGCATCAACAGTTGTATACTA
CTTTAGACATGACTTTGCTCCTGTTAATGCCAGGTGGAGGCCTACCGTAA
TAGCCTGGGAAATGATGGAGAAGCTAAGGGTGCAGCCGACGAAGTTGTGC
GACTGCTTTCTGTGTAACAAACTGGAAGGGAAAATCCATTTCAGTAGGTT
GTTGTGTTCAATAGTGTTGTGATTGTAAAAATCTTTTTTCCATTGCGTAT
TATTTTTGGAGTATTTTGATTGTGGTAATGGGGAGGGGGGGGCGACAATT
GCCCTTTGGTGGGAAGGGAGCCGCTGCTTGACCCAGCCCCCTGGCACAAC
CCAAGACGCACTTGGAGAGACATTTGCTGTCTGTTTGGACTGATTCTGAT
ATTTTCAGCCAGATTGTGGAGGATGTGTGTTGTAGCAACATTCAGAAGGG
TAGATGGATTTGTCCTGTTTGTGCCTTCCTGTGAATTGAAAAGGCGCATG
GGTTCGAAAGGTTGGTGGTGGAATTGATGTAGTATGGAAGTTATGTTAGT
TCCACGTACTATTGTACATACAATATGGAGGATGAGCTTATTGAGCGCTT
TTGGCCTTTGAAGGGATGGATTGTGGTCTATTTTGTCCCGTTGTTGTCAT
AGCTCATGCAATATCCCAACACGCACATGGAGATAACTGCTCCCACACAT
AAGGCATTCAATTGGTTTTATTCTACAGTCGGCAGTTGTACTGAATCAGT
GTGACCTGTGGAGTGAAGGGATTGTGTATGAAGTATGCTCTATATACACA
CTATATACACTGTAACAGTGTGTAGTACAGTACTCCGTATTTTTGTGGAA
GGGTTAGGGTTGGCATGGATGTAACTGAGGTGAGACTCCTGTAGATCAAA
ATGTCTCAAGAACAGCAACATACCTGAAATGAGTGGGGTGTGTGGATCAA
ATAGGTAGACATAACTCTGTGAATCTCTTGAGGAGGGCATCTACCATGTA
AAGACGTTTTACAGATCACTGGTGGTTTAAGTAATGTGTTTTTGCAGATG
AGCCATTGATAGCCATGTAAGAGTAGAGGGCAAAACAGTATAATATTGAG
GAAGATGGCACGACTTGAGTGAACCCCAATGTGTATTATCAGCTGTGTTA
AGATACCATCAACAGTTCAGGTTCCTGGACCCTCCTGTTGCAAGAACACT
TCCTAGTGAGTGGTGAATCTTGTAAGCCAAGTTTGTGCCATAACACCAAA
CATGCCCGATTTTCAAGGGCTACACTATTTATT
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Coding sequence (CDS) from alignment at C-tenellus_contig11570:1469..5201-

>mRNA_C-tenellus_contig11570.2.1 ID=mRNA_C-tenellus_contig11570.2.1|Name=mRNA_C-tenellus_contig11570.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=585bp|location=Sequence derived from alignment at C-tenellus_contig11570:1469..5201- (Choristocarpus tenellus KU2346)
ATGTGGCTATGCTCTCGATGTTTTTTGAGCTTAGATTGCTGCAGTGTGAG
GAAGTATCCAGCACCGGACATGTGTGCTGTAAATGGGCTTGTTCTGTGCA
ATACTGGTAATAGTTGTATTGTTGTGATTGTTTTTATCCTCATGCCATGC
ACTCATTGCCTCTCCTTGCAGAGTCTCTCCCTCGCTCTGTGCTCCGCCAC
CAATATGTTTGGAACTCCTTCTGGGATGTCATACATGTCCGAGGCAAGCG
TCATGCCCGGATGGATGGATGCTGCTCTGCAGGGCTTGCAGCACAAGCGA
GGGGAGGTGCGCCAAATGTCTTCAGCTCTGTTGAATAATTACTCTCTGGT
AATTGCCAATGCCCTCCCGAGCATAGCTGAAGGGAAGGACAGTGATCTCC
CAGATGAGGCCGCCCAGATCTTGTTTGGGGCCTTGGATGGGCTTGAGGAA
GAGAAGTCGGAGACAGTTGCCCTTAGACGACTTCTGGCAGTGGGACGCTT
ATTGAGGAAGCTTGGGACACCAGGTGTGTCCCTTGTGAATGAGGTTGGCT
TCAAGGAACAGGTGAGACGCTTGGGCAAGTGGTGA
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