mRNA_C-tenellus_contig10791.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10791.4.1
Unique NamemRNA_C-tenellus_contig10791.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10791.4.1 vs. uniprot
Match: A0A6H5K9J8_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9J8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.130e-8
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    1 IDPDRHSVVELLLESYHRQLVLVEHDLAALSQEIQSMQ 114
            +D  RHSVVELLLE+YHRQLVLV HD+AA+ QE++S+Q
Sbjct:  447 LDAHRHSVVELLLENYHRQLVLVGHDVAAMKQEMESLQ 484
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10791.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9J8_9PHAE1.130e-871.05EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10791contigC-tenellus_contig10791:5160..5273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LPU8
Preferred nameMRS2
PFAMsCorA
Model size114
Max annot lvl2759|Eukaryota
KEGG rclassRC00537,RC00983
KEGG koko:K01053,ko:K12765,ko:K16075
KEGG TC1.A.35.5
KEGG ReactionR01519,R02933,R03751
KEGG Pathwayko00030,ko00053,ko00930,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko04113,map00030,map00053,map00930,map01100,map01110,map01120,map01130,map01200,map01220,map04113
KEGG ModuleM00129
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006089,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0008150,GO:0008152,GO:0008324,GO:0009987,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0016020,GO:0016021,GO:0019752,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032787,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045016,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071704,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1901615,GO:1903830,GO:1990542
Exons1
Evalue1.85e-09
EggNOG OGsKOG2662@1|root,KOG2662@2759|Eukaryota
Ec32 ortholog descriptioninner membrane magnesium transporter
Ec32 orthologEc-18_002560.1
EC2.7.11.1,3.1.1.17
Descriptionmagnesium ion transmembrane transporter activity
Cds size114
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789149.1319573-CDS-C-tenellus_contig10791:5159..52731680789149.1319573-CDS-C-tenellus_contig10791:5159..5273Choristocarpus tenellus KU2346CDSC-tenellus_contig10791 5160..5273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10791.4.1prot_C-tenellus_contig10791.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10791 5160..5273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10791.4.1

>prot_C-tenellus_contig10791.4.1 ID=prot_C-tenellus_contig10791.4.1|Name=mRNA_C-tenellus_contig10791.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=38bp
IDPDRHSVVELLLESYHRQLVLVEHDLAALSQEIQSMQ
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mRNA from alignment at C-tenellus_contig10791:5160..5273-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10791.4.1 ID=mRNA_C-tenellus_contig10791.4.1|Name=mRNA_C-tenellus_contig10791.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=114bp|location=Sequence derived from alignment at C-tenellus_contig10791:5160..5273- (Choristocarpus tenellus KU2346)
ATTGATCCTGATCGCCACTCGGTTGTGGAACTCCTTCTGGAGAGTTATCA
TCGACAGCTGGTTCTGGTGGAGCACGACCTAGCGGCTCTTTCACAGGAGA
TACAGTCAATGCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10791:5160..5273-

>mRNA_C-tenellus_contig10791.4.1 ID=mRNA_C-tenellus_contig10791.4.1|Name=mRNA_C-tenellus_contig10791.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=114bp|location=Sequence derived from alignment at C-tenellus_contig10791:5160..5273- (Choristocarpus tenellus KU2346)
ATTGATCCTGATCGCCACTCGGTTGTGGAACTCCTTCTGGAGAGTTATCA
TCGACAGCTGGTTCTGGTGGAGCACGACCTAGCGGCTCTTTCACAGGAGA
TACAGTCAATGCAG
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