mRNA_C-tenellus_contig1079.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1079.3.1
Unique NamemRNA_C-tenellus_contig1079.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1079.3.1 vs. uniprot
Match: D7FWP4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP4_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 1.160e-55
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 2
Query:  257 KMVNVPKERRTYCKAKGCSKHTVHKVTQYKAGKASNFAQGKRRYDHKQMGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKQATGHQY 571
            +MVNVPKERRTYCK K C+KHTVHKVTQYK+GKASNFAQGKRRYDHKQ GFGGQTKPIFHKKAKTTKKVTLRLECK CKAKKQLVI RCKHFELGEKKQATGHQY
Sbjct:   34 EMVNVPKERRTYCKDKRCNKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKLCKAKKQLVIARCKHFELGEKKQATGHQY 138          
BLAST of mRNA_C-tenellus_contig1079.3.1 vs. uniprot
Match: F0YGF9_AURAN (RL44_PICJA 60S ribosomal protein L44 n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YGF9_AURAN)

HSP 1 Score: 195 bits (495), Expect = 9.010e-55
Identity = 94/104 (90.38%), Postives = 97/104 (93.27%), Query Frame = 2
Query:  260 MVNVPKERRTYCKAKGCSKHTVHKVTQYKAGKASNFAQGKRRYDHKQMGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKQATGHQY 571
            MVNVPKER+TYCKAK C KHT HKVTQYKAGKASNFAQGKRRYD KQMGFGGQTKP+FHKKAKTTKKVTLRLECKECKAKKQL IKRCKHFELGEKK+ TGH Y
Sbjct:    1 MVNVPKERKTYCKAKKCRKHTTHKVTQYKAGKASNFAQGKRRYDMKQMGFGGQTKPVFHKKAKTTKKVTLRLECKECKAKKQLTIKRCKHFELGEKKKTTGHTY 104          
BLAST of mRNA_C-tenellus_contig1079.3.1 vs. uniprot
Match: A0A835YP36_9STRA (Zinc-binding ribosomal protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP36_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.690e-54
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 2
Query:  260 MVNVPKERRTYCKAKGCSKHTVHKVTQYKAGKASNFAQGKRRYDHKQMGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKQATGHQY 571
            MVNVPKERRTYCK+K C KHTVHKV+QYK+GKASNFAQGKRRYD KQ G+GGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKK+ATGH Y
Sbjct:    1 MVNVPKERRTYCKSKKCGKHTVHKVSQYKSGKASNFAQGKRRYDSKQKGYGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKKATGHVY 104          
BLAST of mRNA_C-tenellus_contig1079.3.1 vs. uniprot
Match: A0A7S2UXA0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXA0_9STRA)

HSP 1 Score: 192 bits (488), Expect = 8.150e-54
Identity = 92/104 (88.46%), Postives = 98/104 (94.23%), Query Frame = 2
Query:  260 MVNVPKERRTYCKAKGCSKHTVHKVTQYKAGKASNFAQGKRRYDHKQMGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKQATGHQY 571
            MVNVPKERRTYCKAK C+KHT+HKVTQYKAGKASNFAQGKRRYDHKQ G+GGQTKPIFHKKAKTTKK+ LRLECKECK KKQLVIKR KHFELGEKK++TG QY
Sbjct:    1 MVNVPKERRTYCKAKNCNKHTIHKVTQYKAGKASNFAQGKRRYDHKQKGYGGQTKPIFHKKAKTTKKIVLRLECKECKTKKQLVIKRTKHFELGEKKKSTGPQY 104          
BLAST of mRNA_C-tenellus_contig1079.3.1 vs. uniprot
Match: A0A7R9UFU1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFU1_9STRA)

HSP 1 Score: 184 bits (468), Expect = 4.340e-51
Identity = 85/104 (81.73%), Postives = 96/104 (92.31%), Query Frame = 2
Query:  260 MVNVPKERRTYCKAKGCSKHTVHKVTQYKAGKASNFAQGKRRYDHKQMGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKQATGHQY 571
            MVNVPKERRTYCK+  C +H +HKVTQYK+GKASNFAQGKRRYDHKQMG+GGQTKPIFHKKAKTTKK+TLRLECK+CK+K  LV+KRCKHFE+GEKK+  GHQY
Sbjct:    1 MVNVPKERRTYCKSPICRRHELHKVTQYKSGKASNFAQGKRRYDHKQMGYGGQTKPIFHKKAKTTKKITLRLECKKCKSKSHLVVKRCKHFEIGEKKKTAGHQY 104          
BLAST of mRNA_C-tenellus_contig1079.3.1 vs. uniprot
Match: W7TXG3_9STRA (60s ribosomal protein l44 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXG3_9STRA)

HSP 1 Score: 184 bits (468), Expect = 4.340e-51
Identity = 89/104 (85.58%), Postives = 95/104 (91.35%), Query Frame = 2
Query:  260 MVNVPKERRTYCKAKGCSKHTVHKVTQYKAGKASNFAQGKRRYDHKQMGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKQATGHQY 571
            MV +PKER+T+CK K C KHTVHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKPI HKKAKTTKKVTLRLECKECK KKQLVIKR KHFELGEKK+ATGHQY
Sbjct:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104          
BLAST of mRNA_C-tenellus_contig1079.3.1 vs. uniprot
Match: A0A7S3NIT2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIT2_9STRA)

HSP 1 Score: 184 bits (466), Expect = 7.870e-51
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 2
Query:  260 MVNVPKERRTYCKAKGCSKHTVHKVTQYKAGKASNFAQGKRRYDHKQMGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKQAT 559
            MVNVPKERRTYCK K C KHTVHKVTQYKAGKASNFAQGKRRYD KQ G+GGQTKPIFHKKAKTTKKV LRLECKECKAKKQL IKRCKHFELGEKK++T
Sbjct:    1 MVNVPKERRTYCKGKKCKKHTVHKVTQYKAGKASNFAQGKRRYDAKQQGYGGQTKPIFHKKAKTTKKVVLRLECKECKAKKQLCIKRCKHFELGEKKKST 100          
BLAST of mRNA_C-tenellus_contig1079.3.1 vs. uniprot
Match: A0A7S1TR78_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TR78_9STRA)

HSP 1 Score: 184 bits (467), Expect = 8.170e-51
Identity = 86/105 (81.90%), Postives = 96/105 (91.43%), Query Frame = 2
Query:  257 KMVNVPKERRTYCKAKGCSKHTVHKVTQYKAGKASNFAQGKRRYDHKQMGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKQATGHQY 571
            KMVNVPKERR+YCK K C  H VHKVTQYK+GKASNFAQGKRRYD+KQMG+GGQTKPIFHKKAKTTKK+TLRLECK+CK K  LV+KRCKHFE+GEKK+ +GHQY
Sbjct:   10 KMVNVPKERRSYCKNKKCKNHQVHKVTQYKSGKASNFAQGKRRYDNKQMGYGGQTKPIFHKKAKTTKKITLRLECKKCKTKTHLVVKRCKHFEIGEKKKPSGHQY 114          
BLAST of mRNA_C-tenellus_contig1079.3.1 vs. uniprot
Match: A0A812MGG9_SYMMI (RIM-C protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A812MGG9_SYMMI)

HSP 1 Score: 182 bits (462), Expect = 2.670e-50
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 2
Query:  260 MVNVPKERRTYCKAKGCSKHTVHKVTQYKAGKASNFAQGKRRYDHKQMGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKQATGH 565
            MVNVPKER+T+CK K C KHT+HKVTQYK+GKASNFAQGKRRYDHKQMGFGGQTKP+FHKKAKTTKK+TLRLECKECKAKKQL IKR KHFELGEKK+ + +
Sbjct:    1 MVNVPKERKTFCKGKKCGKHTLHKVTQYKSGKASNFAQGKRRYDHKQMGFGGQTKPVFHKKAKTTKKITLRLECKECKAKKQLCIKRTKHFELGEKKKVSAY 102          
BLAST of mRNA_C-tenellus_contig1079.3.1 vs. uniprot
Match: I6ZGD0_9STRA (Ribosomal protein L44 n=1 Tax=Aurantiochytrium sp. KRS101 TaxID=797128 RepID=I6ZGD0_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.840e-50
Identity = 88/104 (84.62%), Postives = 94/104 (90.38%), Query Frame = 2
Query:  260 MVNVPKERRTYCKAKGCSKHTVHKVTQYKAGKASNFAQGKRRYDHKQMGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKQATGHQY 571
            MVNVPKERRT+CK K C KHTVHKVTQYKAGKASNFAQGKRRYD KQ G+GGQTKPIFHKKAKTTKKVTLRLECKECK K Q+ +KRCK FELG+KK+A GHQY
Sbjct:    1 MVNVPKERRTFCKGKQCRKHTVHKVTQYKAGKASNFAQGKRRYDRKQKGYGGQTKPIFHKKAKTTKKVTLRLECKECKTKCQIGLKRCKTFELGQKKEAAGHQY 104          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1079.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWP4_ECTSI1.160e-5592.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0YGF9_AURAN9.010e-5590.38RL44_PICJA 60S ribosomal protein L44 n=2 Tax=Pelag... [more]
A0A835YP36_9STRA1.690e-5490.38Zinc-binding ribosomal protein n=1 Tax=Tribonema m... [more]
A0A7S2UXA0_9STRA8.150e-5488.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9UFU1_9STRA4.340e-5181.73Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TXG3_9STRA4.340e-5185.5860s ribosomal protein l44 n=2 Tax=Monodopsidaceae ... [more]
A0A7S3NIT2_9STRA7.870e-5190.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1TR78_9STRA8.170e-5181.90Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A812MGG9_SYMMI2.670e-5084.31RIM-C protein n=3 Tax=cellular organisms TaxID=131... [more]
I6ZGD0_9STRA2.840e-5084.62Ribosomal protein L44 n=1 Tax=Aurantiochytrium sp.... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1079contigC-tenellus_contig1079:4324..9593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWP4
PFAMsRibosomal_L44
Model size3051
Max annot lvl2759|Eukaryota
KEGG koko:K02929
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.7e-64
EggNOG OGsCOG1631@1|root,KOG3464@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L44e
Ec32 orthologEc-06_001420.1
Descriptionstructural constituent of ribosome
Cds size333
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1079.3.1prot_C-tenellus_contig1079.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1079 4565..7116 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789148.8926919-UTR-C-tenellus_contig1079:4323..45641680789148.8926919-UTR-C-tenellus_contig1079:4323..4564Choristocarpus tenellus KU2346UTRC-tenellus_contig1079 4324..4564 +
1680789148.9535332-UTR-C-tenellus_contig1079:7116..95931680789148.9535332-UTR-C-tenellus_contig1079:7116..9593Choristocarpus tenellus KU2346UTRC-tenellus_contig1079 7117..9593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789148.905351-CDS-C-tenellus_contig1079:4564..45821680789148.905351-CDS-C-tenellus_contig1079:4564..4582Choristocarpus tenellus KU2346CDSC-tenellus_contig1079 4565..4582 +
1680789148.9184096-CDS-C-tenellus_contig1079:5014..51281680789148.9184096-CDS-C-tenellus_contig1079:5014..5128Choristocarpus tenellus KU2346CDSC-tenellus_contig1079 5015..5128 +
1680789148.9320166-CDS-C-tenellus_contig1079:5907..59761680789148.9320166-CDS-C-tenellus_contig1079:5907..5976Choristocarpus tenellus KU2346CDSC-tenellus_contig1079 5908..5976 +
1680789148.94132-CDS-C-tenellus_contig1079:6984..71161680789148.94132-CDS-C-tenellus_contig1079:6984..7116Choristocarpus tenellus KU2346CDSC-tenellus_contig1079 6985..7116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1079.3.1

>prot_C-tenellus_contig1079.3.1 ID=prot_C-tenellus_contig1079.3.1|Name=mRNA_C-tenellus_contig1079.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=111bp
MFICGKMVNVPKERRTYCKAKGCSKHTVHKVTQYKAGKASNFAQGKRRYD
HKQMGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELG
EKKQATGHQY*
back to top

mRNA from alignment at C-tenellus_contig1079:4324..9593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1079.3.1 ID=mRNA_C-tenellus_contig1079.3.1|Name=mRNA_C-tenellus_contig1079.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5270bp|location=Sequence derived from alignment at C-tenellus_contig1079:4324..9593+ (Choristocarpus tenellus KU2346)
ACCCTGTCTGTCTCACTGAGACAAATTTGCTGTGAAGGTAAGGGAAGTGA CACCTATTAGTGCTAGATTATCTTGATAATCCTCTGTGTTAGTTAATGGT CGAGACCATATATAGTAAATACCTGTGTGGTCATTTGGATGGAGGGTTTG GTCATTTCGTTGGACTACAGTGTTGTGCTTTGGTGTCTTGCGATAGGGCT TGATCACTGAAGGATAAGTGCGTCGAAGGAAAGGTTGAGGGATGTTTATA TGTGGAAAGGTACGATGGATGTGTGAGTGCCCACACGTGGCGTTGGTGTC GCCGATTGTCTGCGGGGCTTAGGGTTGGGGCAAGATGATGTGTCGAGGGG GGACCAATCTCATGCTGAAATCCGAGATCACCCCGTTTGTACTGAAAAGA GGGCATAAGACTGCATTGATGTTTTGGAGGAACCGAAGAACTTCCCGGAA TGAGTACGCATAGGTACAGGAGAAGCAGCTCTCGACGCGTGCTCTTTTGG TTTTGAGTGTATCAGGAGCTGGGTCGAGCCACGCATCAATCCACAGCTGG GCAGGAGGAATATTGGAACTAAGAAATATTAGGAGGCAACTCTCCCCCTT GGCGTGGACTTAAGTAGAAGTTCAGTGTGCTGATTCCCCGCCATGCTTCT CCTTTCCATGCACTCGGCTCTGGTTACATGTTGGGAAATAGATGGTGAAC GTTCCCAAGGAGAGGCGAACTTACTGCAAGGCCAAGGGGTGCAGCAAGCA TACTGTGCACAAGGTCACACAGTACAAGGCCGGAAAGGCTTCCAACTTTG CCCAGGTGCGCTCGTCGCTTCTTCTCATACTTGAGACATGTTGATCTATT GAAGTCATGAAGTAAAGCACAGACTTTGCTTACCTGTGTTCACTATTTTA CACACCTTACTCGTCGCTTCTCCTCATACTTGAGACATGTTGATCTACTG AAGTCATGAAGTAAAGCACAGTTTTCTCAGACTTTCCTTACCTGTGTTCA CTATTTTACACACCTTACCTTGTACCTGAGCTGCGTCTGTGTATTCGTGC CGAGGACTTGGTAGTTTTAGAAGGGGTATGCTTTCAAATTGACTTCAATT GTGGTCAAGTTGTCGTTTACATGTACTTACCTGACTAAAGGACGCGGATA ATAGGTTTCAAGTTCGTAAGATGCATACTCACCCCACAAGACAAGTTGTT GATGTGTGCCTGTTCACATATCCACTATGAAATATGTTCTCCCTTCTTCA ATAACACCTACCCCCCAAAAAAATGTGTGTGTGTCCCAACTTTTGAGGGA TTGTTTTTCCAAAAATGTGTGTGGATTTGATTGAATTGACAGCGCTTCTG GTCAACACTTGACACAGCATTGATATCATCCCAACCCCCTGAATTGTGTT AAATAATGTGCCTGAAATAATTGTCACAGTTCTTTTTGTCAATTTTTTGT GTGAGGGCTTTCACAATATTGCCTCAGTTCGTATTGTATGTGTTCCCGTT TTCTGGTTGCATGTATGGTTTGGTTCTTCCGTTTAACTTTTGATGTGTGC TTGCTTATCATGTTGCTGATTTGATCGATTGCAGGGGAAGCGTCGTTATG ACCACAAGCAGATGGGTTTCGGTGGGCAGACCAAGCCTATCTTCCACAAG AAGGTAAGAGAAACACAAGAATGATAATTATTCTCATTACCCGTATTGCA TGCCTGATAGTATCTGCTGTACAGCTTTGTGAATCACCCTTGAGAATTTC ATCCCGCTCCCCTATTTTTATTAAAGTTTGAAGCACAGGCACATAGTGAG TATAGGTACATCGTGGACATGGTGTGGGTACAAGCGGGACGGTAAGGAAT GGTGTAGAAACTTGTAAAAAGGCTAAGGAAGTATTCCTTGCTAATAGGTA TTCACAATGGAGTTCGAGAATTTACAGAGGATAGTGTACCTTGTGTTGAT TTTTTAAAATGCCTGATGGTCTTAATTGAGAAATAAATGATCAGTTGTCA TTTCACATGTTATCGTCTGCGATATCTAGCACTAAATGCCACATCTGCTC AATACATAACTGCTGCACAGGACCTACGAGCATGAATTGTAATTAGCTAT TGCAAAAAATTGTGTTAGGGTTAGAGAGTGCCCTTTTTTGGATGATTTGA ATTACAAGTATAATTTTGTACCAAGGCTGTACTTGCTTTCGCGTGGAGTA TTTGGTACTATGCCATATTTGGTAGAACATCTGCAAGTTGGAAATGAAAC AGTGTAGATATTATGTAGTGATTTGGGGTTGAAGGAATGAGGAATAATAA TCCATACGCTCTGAATAGGTTTTTTCATTGTAATACCCTAACCCTAAGAA ATCCTTGAAAAACCTAAACGTTACACCATCCACACATCAACTAAACCATC ATCATGGCCCTTCAACTTTTTGAATGGAGTGCTGTGGGCATTGACACAGT CTTGACAATGGATTGAGGTAAATGAACTATGTGAGGTGCTGAGGGGTCTC TCTAGGGAGCCTTTCCAATGTTTTTTGACATTGGGGTGTGGCATGGTGGT GCCTAAATGATGTATGTGGTTTGATTTGGGGGTTTTGTGTATGTACCAAG ATTCGCATTAAGATAATTGTCTGGCTATATTAACCATTGATGTGTGTGTG TATGTCATCAGGCTAAGACAACAAAGAAGGTGACCCTTCGTCTGGAGTGT AAGGAGTGCAAGGCCAAGAAACAGTTGGTCATCAAGCGTTGCAAGCACTT TGAGTTGGGAGAGAAGAAGCAGGCCACTGGTCACCAGTACTGATCAACAA CTGTTTGGTTATACATGTGCATGGTGTTGGTATGTTAGCCCTGATGGTGT GGTGTGTTGAGGTTCTGCAGGATGTAGTCTAGACCCTGCTGGTGTTGACC TTGTCTTGTTGACTACGATAGTGCACTCATCAGGGCTATTCGAATCTTGA TTATTCTCCTTCTAAGCACAGCTTGTTCTCCGCAAAACAATCTCTCTCTT GGGCATGGTGACATGGTGTTCTTACCCTTAGCATCCTTCCTCTTTTCTGT AAGGTGCCACTTCTTGTTGGTACTGACTCCATGTTGGTCCTTTCCTTTTG GACCTCTCCGTATGTCAGAGGTGACGCATGGAACACCTGGTTAAACTGCT ACATCACTGTCGAGTGTAGGTTATGGTGATCGCCAAGTACTACTACTGTG TATGCAGCACTCATCCGCTGTGTTGATTTGATTCATACGACTGTTCCTCG GTTGAGCCTTGAGTATTGCCTGCGTGAGGTCAACATCATGCCTTCATGGT AAGGCATATCTTGTACTATTTCTTGCTTACCAACCTTGACACCTTACAAA CAGCCTAGGATCCCAAGTACTGTGGGGCAGGTCACGCAATATGCCTGCTG ATCGACTTTTCCTGTGGAAGGATGTGCTTCTCTCCAGCAACAGATTATGA TGACTATAGTGTATTCACCTAATGTATTGGAGATGGATTATATTGCTGAT GCCTTCACTGGATCAGATATATCTCTTAATCATCTAGTCAGCTTTGGGCA TGTCCCTGATGCTGAACTTCTAGGACCCTCTATATGTAAGGAGCTTGATT TTATGATGCACCTATTCAAAGAGACTGGGTGATAAACAATGTGATCATGA CAGAAATCAAAGGTTGAATTGAGATATACCTTGTGTCACCTGTCGTACTC TTGATACTGACACTCTAACTTCCCACGAAAATATGTGAACAGATTCAAAA TGGACCTACCTTTTGTACCCTGCACCCCTTAATCACTCATTCTTGATTTG ATTAATTCAGCTATGGTACTTCAGATGTTGCCTTCCATGACTTGTCCAAT CATCCCATTCCTAAGACTTGATGCTAATTCATTGTAAGACAATGTGCTAA GCACGGTGATGGCTATACTTTTTCAAGTTGTCTTTCCTTTTTTTTAAATT GTGATATTTACATATGCCTCAGTAACATTACTTGAATGTCAGGATTCTTT GTGAGAAGTGTTCTTGGACTAGAGAACCACTGCACCCCAGACTCTCCTTC AATCATCCACATGCCGCTATATGGAGTACTTGTGGAGTAGGTAATTGGTA TGGATTTCACTCTTTGTTGGTGCCCTCCCCTCTACATCCTCATCAGTTGT CTCCATATCCAACCCGTGAAGCTCTTCCCCTTCCACCTGAATTGCACAGG GAGGTGGTGCGATGAGCTTCTTATTGAAGTTCACTTTTCCCATCAAGAAG TCTTTCAGGAAGTAATAAGGTCCAGCCATTAAACCAATGGCATGTTGCAA GACTCTTCCACACTTCTCTCTGGCACCTCGTCTTCGAATGAACCACTTTG CATTATGCTGACCGATATTCATGACCTGTGCATCAAAGACCAGGGTGCTG TATGGTGGCACCTCAAACCCTGCATACACCTCCCCAAAGGCATAGTCAGA TCGTACCTCAACCTTTGCCCTCTCTCCGAGGCTCATGTGTGAAACGGCTA TGTCCAGCCCCCTAAGCACAGTTCCCCGTGTGTGGAAGAGGAAGCGAGCA TCAACCGAACCTTGTACCAAGTCAGAGGCACTCTCCTCTTCTTTGAGCTT GAGTTGGTACCACTGCATCTGACTGCCCTCCATGCTGACCTCAAGCAGAG CTTTAGGGGATCTCTTAACCTGGAGTATGGTGTTGTGCAGATGGAAGAGA GAGGGCATCTTTTGCCGAATCCTTTGAAAGGGACTCAGTACAACCCGAGG CTTTTCCTTGATCTTGAGGCTGGGGATGAGGGTGATGACTATCCATTGTT GAGTGTTGTTATCCTGATATTCAACCAGGATGCCTCTGTCTTTCTCAAAG CGCTTGACGTGTGCTGTGATCATGCATGTGTGTAGCAGAAGGTCATGTTG GTGCGTGATCCGTGCTTGATGGGAAGGTAAACACCCAGGATGTTGTGGTA GTCTATTGCTATTCTAACACCATGAGCTAACTGATGTTCATTTATTAATG TATGGTCAACTGTTCATGAATGCAGATGATGCCCCAAACTCAGATGGTGT CACTCTAAATCAGGTCACACTCACTACTCAAGGTAACTATTGTTCTGGGC GTTTGAATTAAACGGCTGGATATTTGGACAGAGATTGTAAGGTAGAACAC AGCATCGTTTTGAGAATTTTGGCTAGTTCTCAGTTGTAGAAATGGCGTTA TAAAGTGGTTAGGATTTGAAATTATTTGAGTAATGAAAAAACGGACCTAA CTACTGAGGGCAAAAATTGG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig1079:4324..9593+

>mRNA_C-tenellus_contig1079.3.1 ID=mRNA_C-tenellus_contig1079.3.1|Name=mRNA_C-tenellus_contig1079.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=333bp|location=Sequence derived from alignment at C-tenellus_contig1079:4324..9593+ (Choristocarpus tenellus KU2346)
ATGTTTATATGTGGAAAGATGGTGAACGTTCCCAAGGAGAGGCGAACTTA
CTGCAAGGCCAAGGGGTGCAGCAAGCATACTGTGCACAAGGTCACACAGT
ACAAGGCCGGAAAGGCTTCCAACTTTGCCCAGGGGAAGCGTCGTTATGAC
CACAAGCAGATGGGTTTCGGTGGGCAGACCAAGCCTATCTTCCACAAGAA
GGCTAAGACAACAAAGAAGGTGACCCTTCGTCTGGAGTGTAAGGAGTGCA
AGGCCAAGAAACAGTTGGTCATCAAGCGTTGCAAGCACTTTGAGTTGGGA
GAGAAGAAGCAGGCCACTGGTCACCAGTACTGA
back to top