prot_C-tenellus_contig9962.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig9962.1.1
Unique Nameprot_C-tenellus_contig9962.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length81
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9962.1.1 vs. uniprot
Match: A0A6H5J9Y2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Y2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 6.900e-13
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 AFTNADLEEDLYVELPEVVVTEFNGAVGKLQKSLYGIVQASCNWNALLVVASLLELGLEQCEADPCLFRWMLDGELVLIM 80
            AF  ++LEED+Y+ LP+      +G + KL KSLYG+ QAS  W+A+L    L+ LG EQC AD C+FR + DG +VLI+
Sbjct:   41 AFVRSELEEDVYMRLPQGCGA-LSGMIVKLGKSLYGLRQASRQWHAMLK-RCLVALGFEQCMADACVFRLIEDGCVVLIL 118
[Close]
BLAST of mRNA_C-tenellus_contig9962.1.1 vs. uniprot
Match: A0A6H5JBR0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBR0_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 8.840e-13
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 0 
Query:    1 AFTNADLEEDLYVELPEVVVTEFNGAVGKLQKSLYGIVQASCNWNALLVVASLLELGLEQCEADPCLFRWMLDGELVLIM 80
            AF  A L+ED+++ LPEV     +G + +L KSLYG+ QAS  W ALL    LL LG EQC AD C+FR +  GE+VL++
Sbjct:  146 AFVRAPLKEDIFMRLPEVCGA-LSGKIVQLNKSLYGLRQASREWYALLKKC-LLALGFEQCMADSCVFRLVEGGEVVLLL 223
[Close]
BLAST of mRNA_C-tenellus_contig9962.1.1 vs. uniprot
Match: A0A6H5JIY9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.390e-12
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 0 
Query:    1 AFTNADLEEDLYVELPEVVVTEFNGAVGKLQKSLYGIVQASCNWNALLVVASLLELGLEQCEADPCLFRWMLDGELVLIML 81
            AF  ++LEED+Y+ LP+      +G   KL K LYG+ QAS  W+A+L    L+ELG EQC AD C+FR++ DG +VLI++
Sbjct:   21 AFVRSELEEDVYMRLPQGCGA-LSGMTVKLGKILYGLRQASRQWHAMLK-RCLVELGFEQCMADACVFRFIEDGCVVLILI 99
[Close]
BLAST of mRNA_C-tenellus_contig9962.1.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.290e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 AFTNADLEEDLYVELPEVVVTEFNGAVGKLQKSLYGIVQASCNWNALLVVASLLELGLEQCEADPCLFRWMLDGELVLIM 80
            AF  ++LEED+Y+ LP+      +G + KL KSLYG+ QAS  W+A+L    L+ LG EQC AD C+FR + DG +VLI+
Sbjct:   67 AFVRSELEEDVYMRLPQGCGA-LSGMIVKLGKSLYGLRQASRQWHAMLK-RCLVALGFEQCMADACVFRLIEDGCVVLIL 144
[Close]
BLAST of mRNA_C-tenellus_contig9962.1.1 vs. uniprot
Match: A0A6H5JQ15_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ15_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.360e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 AFTNADLEEDLYVELPEVVVTEFNGAVGKLQKSLYGIVQASCNWNALLVVASLLELGLEQCEADPCLFRWMLDGELVLIM 80
            AF  ++LEED+Y+ LP+      +G + KL KSLYG+ QAS  W+A+L    L+ LG EQC AD C+FR + DG +VLI+
Sbjct:  512 AFVRSELEEDVYMRLPQGCGA-LSGMIVKLGKSLYGLRQASRQWHAMLK-RCLVALGFEQCMADACVFRLIEDGCVVLIL 589
[Close]
BLAST of mRNA_C-tenellus_contig9962.1.1 vs. uniprot
Match: A0A6H5JSQ4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSQ4_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.380e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 AFTNADLEEDLYVELPEVVVTEFNGAVGKLQKSLYGIVQASCNWNALLVVASLLELGLEQCEADPCLFRWMLDGELVLIM 80
            AF  ++LEED+Y+ LP+      +G + KL KSLYG+ QAS  W+A+L    L+ LG EQC AD C+FR + DG +VLI+
Sbjct:  558 AFVRSELEEDVYMRLPQGCGA-LSGMIVKLGKSLYGLRQASRQWHAMLK-RCLVALGFEQCMADACVFRLIEDGCVVLIL 635
[Close]
BLAST of mRNA_C-tenellus_contig9962.1.1 vs. uniprot
Match: A0A6H5JYC5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.390e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 AFTNADLEEDLYVELPEVVVTEFNGAVGKLQKSLYGIVQASCNWNALLVVASLLELGLEQCEADPCLFRWMLDGELVLIM 80
            AF  ++LEED+Y+ LP+      +G + KL KSLYG+ QAS  W+A+L    L+ LG EQC AD C+FR + DG +VLI+
Sbjct:  506 AFVRSELEEDVYMRLPQGCGA-LSGMIEKLGKSLYGLRQASRQWHAMLK-RFLVALGFEQCMADACVFRLIEDGCVVLIL 583
[Close]
BLAST of mRNA_C-tenellus_contig9962.1.1 vs. uniprot
Match: A0A6H5J9U0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9U0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.400e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 AFTNADLEEDLYVELPEVVVTEFNGAVGKLQKSLYGIVQASCNWNALLVVASLLELGLEQCEADPCLFRWMLDGELVLIM 80
            AF  ++LEED+Y+ LP+      +G + KL KSLYG+ QAS  W+A+L    L+ LG EQC AD C+FR + DG +VLI+
Sbjct:  537 AFVRSELEEDVYMRLPQGCGA-LSGMIVKLGKSLYGLRQASRQWHAMLK-RCLVALGFEQCMADACVFRLIEDGCVVLIL 614
[Close]
BLAST of mRNA_C-tenellus_contig9962.1.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.420e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 AFTNADLEEDLYVELPEVVVTEFNGAVGKLQKSLYGIVQASCNWNALLVVASLLELGLEQCEADPCLFRWMLDGELVLIM 80
            AF  ++LEED+Y+ LP+      +G + KL KSLYG+ QAS  W+A+L    L+ LG EQC AD C+FR + DG +VLI+
Sbjct:  897 AFVRSELEEDVYMRLPQGCGA-LSGMIVKLGKSLYGLRQASRQWHAMLK-RCLVALGFEQCMADACVFRLIEDGCVVLIL 974
[Close]
BLAST of mRNA_C-tenellus_contig9962.1.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.420e-12
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:    1 AFTNADLEEDLYVELPEVVVTEFNGAVGKLQKSLYGIVQASCNWNALLVVASLLELGLEQCEADPCLFRWMLDGELVLIM 80
            AF  ++LEED+Y+ LP+      +G + KL KSLYG+ QAS  W+A+L    L+ LG EQC AD C+FR + DG +VLI+
Sbjct:  977 AFVRSELEEDVYMRLPQGCGA-LSGMIVKLGKSLYGLRQASRQWHAMLK-RCLVALGFEQCMADACVFRLIEDGCVVLIL 1054
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9962.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9Y2_9PHAE6.900e-1348.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBR0_9PHAE8.840e-1350.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIY9_9PHAE1.390e-1248.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE2.290e-1248.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQ15_9PHAE2.360e-1248.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSQ4_9PHAE2.380e-1248.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYC5_9PHAE2.390e-1248.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J9U0_9PHAE2.400e-1248.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JG40_9PHAE2.420e-1248.75Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5L6V8_9PHAE2.420e-1248.75Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..70
e-value: 8.1E-9
score: 35.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9962contigC-tenellus_contig9962:1639..1881 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9962.1.1mRNA_C-tenellus_contig9962.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig9962 1639..1881 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig9962.1.1 ID=prot_C-tenellus_contig9962.1.1|Name=mRNA_C-tenellus_contig9962.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=81bp
AFTNADLEEDLYVELPEVVVTEFNGAVGKLQKSLYGIVQASCNWNALLVV
ASLLELGLEQCEADPCLFRWMLDGELVLIML
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2