prot_C-tenellus_contig9957.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig9957.2.1
Unique Nameprot_C-tenellus_contig9957.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length138
Homology
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A6H5J6Y2_9PHAE (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Y2_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.750e-15
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0
Query:    6 LANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRTGLKMIQ 49
            LA ILCCLCGR IQPNGANMCG CLQ++VDVTEGIP+ GL +IQ
Sbjct:   61 LATILCCLCGRPIQPNGANMCGACLQDQVDVTEGIPKKGLTIIQ 104          
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: D7G1R1_ECTSI (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 9.280e-14
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 0
Query:    6 LANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRTGLKMIQ 49
            LA ILCCLCGR IQPNGANMCG CL+++VDVTEGIP+ GL +IQ
Sbjct:   60 LATILCCLCGRPIQPNGANMCGACLRDQVDVTEGIPKKGLTIIQ 103          
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A836CPD6_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.310e-9
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0
Query:    1 MGRQALANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRTGLKMIQ 49
            M    L  ILCCLCG+SIQPN A +CG CL+ EVD+TE I   GLK+ Q
Sbjct:    1 MATAHLGAILCCLCGKSIQPNSAALCGECLRAEVDITENIQEKGLKVYQ 49          
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A8J1UUL0_OWEFU (60S ribosomal export protein NMD3 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UUL0_OWEFU)

HSP 1 Score: 58.2 bits (139), Expect = 3.490e-7
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0
Query:    5 ALANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRT 43
            +L  ILCC CG SI PN ANMC  CLQ EVD+TEGIP++
Sbjct:   11 SLGTILCCKCGVSIAPNPANMCVGCLQSEVDITEGIPKS 49          
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A6G0WWT1_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWT1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.700e-7
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0
Query:    9 ILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPR 42
            ILCC+CG SI+PN ANMC PCL  EVD+TEGI +
Sbjct:    3 ILCCMCGVSIEPNMANMCAPCLSNEVDITEGISK 36          
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A2R5G5Z6_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5Z6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.580e-7
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 0
Query:    1 MGRQALANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPR 42
            +G+ AL +I CC+CG SIQPN  NMC  CL++ VDVTEGI +
Sbjct:    4 VGKPALPDIACCMCGVSIQPNDVNMCLQCLKDRVDVTEGISK 45          
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A7S3UCS2_9CHLO (60S ribosomal export protein NMD3 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UCS2_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 1.630e-6
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 0
Query:    5 ALANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPR 42
            AL N+LCCLCG +IQPN +NMC  C++ +VDVTEGI +
Sbjct:    8 ALPNVLCCLCGITIQPNPSNMCVNCVRSQVDVTEGIQK 45          
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A138ZZY6_GONPJ (60S ribosomal export protein NMD3 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A138ZZY6_GONPJ)

HSP 1 Score: 55.5 bits (132), Expect = 3.050e-6
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 0
Query:    9 ILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRT 43
            ILCC+CG +I PN A MCG CL+ EVD+TEGIP++
Sbjct:   20 ILCCVCGVAIPPNPAAMCGTCLRNEVDITEGIPKS 54          
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A0G4EXZ8_VITBC (60S ribosomal export protein NMD3 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EXZ8_VITBC)

HSP 1 Score: 55.5 bits (132), Expect = 3.110e-6
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    6 LANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRTGL 45
            +  +LCCLCG SI+ N A MC  CL+ +VD+TEGI RTGL
Sbjct:    1 MPTVLCCLCGTSIEANPAMMCVSCLRSQVDITEGISRTGL 40          
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Match: A0A7J6MZ82_PERCH (60S ribosomal export protein NMD3 n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MZ82_PERCH)

HSP 1 Score: 55.1 bits (131), Expect = 4.600e-6
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    7 ANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPR 42
            AN+LCC+CG S+QPN +NMC  C++ EVD+TEGI +
Sbjct:  902 ANVLCCVCGASMQPNQSNMCVNCMKGEVDITEGISK 937          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9957.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5J6Y2_9PHAE1.750e-1579.5560S ribosomal export protein NMD3 n=1 Tax=Ectocarp... [more]
D7G1R1_ECTSI9.280e-1477.2760S ribosomal export protein NMD3 n=1 Tax=Ectocarp... [more]
A0A836CPD6_9STRA6.310e-959.1860S ribosomal export protein NMD3 n=1 Tax=Tribonem... [more]
A0A8J1UUL0_OWEFU3.490e-766.6760S ribosomal export protein NMD3 n=1 Tax=Owenia f... [more]
A0A6G0WWT1_9STRA4.700e-770.5960S ribosomal export protein NMD3 n=1 Tax=Aphanomy... [more]
A0A2R5G5Z6_9STRA6.580e-759.5260S ribosomal export protein NMD3 n=1 Tax=Hondaea ... [more]
A0A7S3UCS2_9CHLO1.630e-663.1660S ribosomal export protein NMD3 n=1 Tax=Picocyst... [more]
A0A138ZZY6_GONPJ3.050e-665.7160S ribosomal export protein NMD3 n=1 Tax=Gonapody... [more]
A0A0G4EXZ8_VITBC3.110e-660.0060S ribosomal export protein NMD3 n=1 Tax=Vitrella... [more]
A0A7J6MZ82_PERCH4.600e-661.1160S ribosomal export protein NMD3 n=1 Tax=Perkinsu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 80..84
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..105
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..79
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 106..137
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9957contigC-tenellus_contig9957:4724..5137 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9957.2.1mRNA_C-tenellus_contig9957.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig9957 4619..5275 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig9957.2.1 ID=prot_C-tenellus_contig9957.2.1|Name=mRNA_C-tenellus_contig9957.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=138bp
MGRQALANILCCLCGRSIQPNGANMCGPCLQEEVDVTEGIPRTGLKMIQA
SDSRSVQVNICITHGYAGGGICFCHWWIVEMVRELIVSAESIISIDFIHI
AFCILQLSLHLKVPNGAVHNITDSKFHPCTLGMLISI*
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