prot_C-tenellus_contig9870.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig9870.1.1
Unique Name	prot_C-tenellus_contig9870.1.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	175

Homology

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BLAST of mRNA_C-tenellus_contig9870.1.1 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 7.130e-40
Identity = 79/138 (57.25%), Postives = 101/138 (73.19%), Query Frame = 0

Query:    2 GLPGMGIT-LAGMHAHPSQASYVDPRLLQH---VATMGLPLRLPAEASQTLYVEGVPSDASEREIAHIFRPFPGFLSIRLRVKGGRGGGGGISPIADTMCFVEFESAYHATVAKLGATNYRLDKADRHSPSLRIAYAK 135
            G  GMGI  + G+HA  +      PRL+Q    ++ MGLPL LP++A  TLYVEG+P D SERE+AHIFRPFPG++S+RLR KGGR  G   + + + +CFVEFES+YHAT+AK+GA +YRLDK DR+S  LRI YAK
Sbjct:  140 GYLGMGIGGIGGIHAAQAYGM-ATPRLMQASTAMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANV-EAICFVEFESSYHATIAKMGAADYRLDKIDRNSAVLRIEYAK 275

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BLAST of mRNA_C-tenellus_contig9870.1.1 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.030e-29
Identity = 55/102 (53.92%), Postives = 74/102 (72.55%), Query Frame = 0

Query:   34 MGLPLRLPAEASQTLYVEGVPSDASEREIAHIFRPFPGFLSIRLRVKGGRGGGGGISPIADTMCFVEFESAYHATVAKLGATNYRLDKADRHSPSLRIAYAK 135
            MGLPL+LP +AS TLYVEG+P DASERE+AHIFRPFPG+ S+R+R K    G G        MCFVEF++AY A+VAK+   +Y++D+ D  + +L + YA+
Sbjct:    1 MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGA----QRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYAR 98

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BLAST of mRNA_C-tenellus_contig9870.1.1 vs. uniprot
Match: A0A6J0KMJ8_RAPSA (nuclear speckle RNA-binding protein A-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KMJ8_RAPSA)

HSP 1 Score: 92.4 bits (228), Expect = 1.110e-20
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 0

Query:   38 LRLPAEASQTLYVEGVPSDASEREIAHIFRPFPGFLSIRLRVKGGRGGGGGISPIADTMCFVEFESAYHATVAKLGATNYRLDKADRHSPSLRIAYAKPPRNRDGRGG 145
            LRLP +AS TL+VEG+PSD S RE+AHIFRPFPG+  +RL  K  +   G +      +CFV+FE+   A  A+     YR+D+ +R S  LRI +++ P  R G+ G
Sbjct:   45 LRLPPDASSTLFVEGLPSDCSMREVAHIFRPFPGYKEVRLVTKDSKHRNGDLI----ILCFVDFENPACAATARNALQGYRMDEEERDSKILRIQFSRNPGPRPGQRG 148

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BLAST of mRNA_C-tenellus_contig9870.1.1 vs. uniprot
Match: W1Q0B1_AMBTC (RRM domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1Q0B1_AMBTC)

HSP 1 Score: 92.4 bits (228), Expect = 9.970e-20
Identity = 61/148 (41.22%), Postives = 85/148 (57.43%), Query Frame = 0

Query:    2 GLPGMGITLAGMHAHPSQASYVDPRLLQHVATM----GLP-LRLPAEASQTLYVEGVPSDASEREIAHIFRPFPGFLSIRLRVKGGRGGGGGISPIADTMCFVEFESAYHATVAKLGATNYRLDKADRHSPSLRIAYAKPPRNRDGRG 144
            G+PG+ +    M   P+    +DP L     +M    G P + LP +AS TL+VEG+PS+ + RE+AHIFRPF GF  +RL  K  R  GG   P+   +CFV+F S  +A  A      Y+LD+ DR SP+LR+ +A+ P  R G G
Sbjct:  105 GMPGLPVEDPVMMGVPN----MDPSLGAKGRSMPFGGGRPEMMLPPDASNTLFVEGLPSNCTRREVAHIFRPFVGFKEVRLVNKESRQPGG--DPLV--LCFVDFTSPAYAATALDALQGYKLDEHDRDSPNLRLQFARYPGPRSGGG 244

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BLAST of mRNA_C-tenellus_contig9870.1.1 vs. uniprot
Match: UPI001F5CCAF8 (protein MATERNALLY EXPRESSED GENE 5-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CCAF8)

HSP 1 Score: 90.9 bits (224), Expect = 1.390e-19
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 0

Query:   40 LPAEASQTLYVEGVPSDASEREIAHIFRPFPGFLSIRLRVKGGRGGGGGISPIADTMCFVEFESAYHATVAKLGATNYRLDKADRHSPSLRIAYAK--PPRNRDGRGG 145
            LP +AS TL++EG+P+D   RE++HIFRPF GF  +RL  K  R  GG   PI   +CFV+F +A  A V+      Y+ D+ DR+SP LR+ +A+   PR + G GG
Sbjct:   88 LPPDASNTLFIEGIPTDCERREVSHIFRPFVGFKEVRLVTKDPRHPGG--DPIV--LCFVDFANAAQAAVSMEALQGYKFDEHDRNSPHLRLQFARFTGPRGQSGPGG 191

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BLAST of mRNA_C-tenellus_contig9870.1.1 vs. uniprot
Match: A0A6G1CPI1_9ORYZ (RRM domain-containing protein n=3 Tax=Oryza TaxID=4527 RepID=A0A6G1CPI1_9ORYZ)

HSP 1 Score: 91.7 bits (226), Expect = 2.180e-19
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 0

Query:   40 LPAEASQTLYVEGVPSDASEREIAHIFRPFPGFLSIRLRVKGGRGGGGGISPIADTMCFVEFESAYHATVAKLGATNYRLDKADRHSPSLRIAYAK--PPRNRDGRGG 145
            LP +AS TL++EG+P+D + RE++HIFRPF GF  +RL  K  R  GG   PI   +CFV+FE+A  A +A      Y+ D+ DR+SP LR+ +A+   PR   G GG
Sbjct:  147 LPPDASNTLFIEGIPTDCARREVSHIFRPFVGFREVRLVNKEARHPGG--DPIL--LCFVDFETATQAAIAMDALQGYKFDEHDRNSPHLRLQFARFTGPRGGSGPGG 250

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BLAST of mRNA_C-tenellus_contig9870.1.1 vs. uniprot
Match: A0A2R6RSH4_ACTCC (RNA-binding protein n=2 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RSH4_ACTCC)

HSP 1 Score: 90.9 bits (224), Expect = 2.720e-19
Identity = 51/126 (40.48%), Postives = 74/126 (58.73%), Query Frame = 0

Query:   24 DPRLLQHVATMGL-----PLRLPAEASQTLYVEGVPSDASEREIAHIFRPFPGFLSIRLRVKGGRGGGGGISPIADTMCFVEFESAYHATVAKLGATNYRLDKADRHSPSLRIAYAKPPRNRDGRG 144
            DP +     ++G+      L LP +A+ TL+VEG+PS+ + RE++HIFRPF G+  +RL  K  R  GG   P+   +CFV+F S  HA  A      Y+ D+ DRHS +LR+ +A+ P  R G G
Sbjct:  105 DPAMAAKGRSLGMGGGRPELPLPHDATNTLFVEGLPSNCTRREVSHIFRPFVGYKEVRLVTKESRHSGG--DPMV--LCFVDFASPAHAATAMDALQGYKFDEHDRHSVNLRLQFARYPGARSGGG 226

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BLAST of mRNA_C-tenellus_contig9870.1.1 vs. uniprot
Match: V4TRQ4_CITCL (RRM domain-containing protein n=3 Tax=Citrus TaxID=2706 RepID=V4TRQ4_CITCL)

HSP 1 Score: 90.9 bits (224), Expect = 2.770e-19
Identity = 51/105 (48.57%), Postives = 64/105 (60.95%), Query Frame = 0

Query:   40 LPAEASQTLYVEGVPSDASEREIAHIFRPFPGFLSIRLRVKGGRGGGGGISPIADTMCFVEFESAYHATVAKLGATNYRLDKADRHSPSLRIAYAKPPRNRDGRG 144
            LP +AS TL+VEG+PSD S RE+AHIFRPF G+  +RL  K  R  GG   P+   +CFV+F S  HA  A      YR D+ DR S  LR+ +A+ P  R G G
Sbjct:  127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGG--DPLI--LCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFARYPGARSGGG 227

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BLAST of mRNA_C-tenellus_contig9870.1.1 vs. uniprot
Match: A0A2H5Q6Z5_CITUN (RRM domain-containing protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5Q6Z5_CITUN)

HSP 1 Score: 90.9 bits (224), Expect = 3.560e-19
Identity = 51/105 (48.57%), Postives = 64/105 (60.95%), Query Frame = 0

Query:   40 LPAEASQTLYVEGVPSDASEREIAHIFRPFPGFLSIRLRVKGGRGGGGGISPIADTMCFVEFESAYHATVAKLGATNYRLDKADRHSPSLRIAYAKPPRNRDGRG 144
            LP +AS TL+VEG+PSD S RE+AHIFRPF G+  +RL  K  R  GG   P+   +CFV+F S  HA  A      YR D+ DR S  LR+ +A+ P  R G G
Sbjct:   74 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGG--DPLI--LCFVDFVSPAHAATAMDALQGYRFDEHDRDSVKLRLQFARYPGARSGGG 174

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BLAST of mRNA_C-tenellus_contig9870.1.1 vs. uniprot
Match: UPI000B8C93C7 (RNA-binding protein 1-like isoform X2 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C93C7)

HSP 1 Score: 90.5 bits (223), Expect = 3.810e-19
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 0

Query:   40 LPAEASQTLYVEGVPSDASEREIAHIFRPFPGFLSIRLRVKGGRGGGGGISPIADTMCFVEFESAYHATVAKLGATNYRLDKADRHSPSLRIAYAKPPRNRDGRG 144
            LP +AS TL+VEG+PSD + RE+AHIFRPF G+  +RL  K  R  GG   P+   +CFV+F S  HA  A      YR D+ DR S  LR+ +A+ P  R G G
Sbjct:  126 LPPDASSTLFVEGLPSDCTRREVAHIFRPFVGYKEVRLVSKESRHAGG--DPLI--LCFVDFVSPAHAATAMDALQGYRFDEHDRDSIKLRLQFARYPGARSGAG 226

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig9870.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig9870.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L4C0_9PHAE	7.130e-40	57.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835Z002_9STRA	6.030e-29	53.92	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A6J0KMJ8_RAPSA	1.110e-20	45.37	nuclear speckle RNA-binding protein A-like n=1 Tax...	[more]
W1Q0B1_AMBTC	9.970e-20	41.22	RRM domain-containing protein n=1 Tax=Amborella tr...	[more]
UPI001F5CCAF8	1.390e-19	45.37	protein MATERNALLY EXPRESSED GENE 5-like n=2 Tax=L...	[more]
A0A6G1CPI1_9ORYZ	2.180e-19	46.30	RRM domain-containing protein n=3 Tax=Oryza TaxID=...	[more]
A0A2R6RSH4_ACTCC	2.720e-19	40.48	RNA-binding protein n=2 Tax=Actinidia chinensis va...	[more]
V4TRQ4_CITCL	2.770e-19	48.57	RRM domain-containing protein n=3 Tax=Citrus TaxID...	[more]
A0A2H5Q6Z5_CITUN	3.560e-19	48.57	RRM domain-containing protein n=1 Tax=Citrus unshi...	[more]
UPI000B8C93C7	3.810e-19	47.62	RNA-binding protein 1-like isoform X2 n=1 Tax=Cari...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 39..142 e-value: 8.9E-16 score: 59.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 48..115 e-value: 1.2E-6 score: 28.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 46..136 score: 9.849
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..174
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 27..139
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 21..174
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 13..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..12
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..20
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 43..166

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig9870	contig	C-tenellus_contig9870:702..1855 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig9870.1.1	mRNA_C-tenellus_contig9870.1.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig9870 240..2984 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig9870.1.1 ID=prot_C-tenellus_contig9870.1.1|Name=mRNA_C-tenellus_contig9870.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=175bp
MGLPGMGITLAGMHAHPSQASYVDPRLLQHVATMGLPLRLPAEASQTLYV
EGVPSDASEREIAHIFRPFPGFLSIRLRVKGGRGGGGGISPIADTMCFVE
FESAYHATVAKLGATNYRLDKADRHSPSLRIAYAKPPRNRDGRGGGVGDR
DRDRDRDRERDRDRDRGNDRENHH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR035979	RBD_domain_sf