prot_C-tenellus_contig9853.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig9853.1.1
Unique Nameprot_C-tenellus_contig9853.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length801
Homology
BLAST of mRNA_C-tenellus_contig9853.1.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 6.960e-26
Identity = 113/353 (32.01%), Postives = 157/353 (44.48%), Query Frame = 0
Query:   11 TQGKGQGGMTSWVRHVMELQGMDTLWGIALDATDTDVSFAASTLLIDLHYRLGPKLSPRGAKIRGQFVNTCLGRVAESLPVIVALK------------------------------KLDEQEGGGSITLRGVSISSSALLHQHQTTRDSV----ASVTATKVEKRDGQNDQNDTAGGTSPKGRVESLSSTSATATALGTWAVTSAPGCKGM------------DTVAHTRRVGRCALLLKRFVDRGKEEEASVAAESV-ITVEVRAGRQWEAVLEVQLPEQVTVGELRWEISRRLRIPAEFIDLSRQINRRNVTVLETLEPDSTSLEA---------ANLAPFVPLPPPTATN 307
            +QG    G   WVRH ++L G+DTLW + LDA  +  S AAS L+++LH RLGPKL  + A+I   FV+TCL  +  S+  I +L+                              +L E   G  I  R     SS+L  +  +TR       AS  +T VE RD                R   L      A   G+  V S  G                   +  RR GRC LLL +FV + KEEE   A+ +  + V V  G     VL+V+LP    +G+LR E++RR R+PAEF++L R + R+     E L+ D  SLEA         +NL   +P P P+ T+
Sbjct:  996 SQGAAVVGGGGWVRHGIDLDGLDTLWEVVLDAAGSQASLAASDLIVELHLRLGPKLKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAGDAAAPXXXXXXXXXXXDTAVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRD--------------VTRAMQLE-----AEHHGSVVVGSGRGXXXXXXXXXXXXSPQAQIASLHRRAGRCILLLAKFVTKSKEEENGAASGTTRVRVSVEVGPDRVPVLDVRLPLSTVLGDLRCEVARRFRVPAEFLELGRVVRRKGNATTEVLDQDGASLEALGLVVAGTGSNLPNHLPTPSPSKTS 1329          
BLAST of mRNA_C-tenellus_contig9853.1.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.190e-25
Identity = 95/302 (31.46%), Postives = 138/302 (45.70%), Query Frame = 0
Query:   22 WVRHVMELQGMDTLWGIALDATDTDVSFAASTLLIDLHYRLGPKLSPRGAKIRGQFVNTCL--------------GRVAESLPVIVALKKLDEQEGGGSITLRGVSISSSALLHQHQTTRDSVASVTATKVEKRDGQNDQNDTAGG--------------TSPKGRVESLSSTSATATALGTWAVTSAPGCKGMDTVAHTRRVGRCALLLKRFVDRGKEEE-ASVAAESVITVEVRAGRQWEAVLEVQLPEQVTVGELRWEISRRLRIPAEFIDLSRQINRRNVTVLETLEPDSTSLEAANL 294
            WVRH M+L G+DTLW + LDA  +  S AAS L+++LH RLGPKL  + A+I   FV+TCL              GR A++            +E     T  GV+  S  ++    +   SV     T+ ++ + ++      G                SP+ ++ SL                              RR GRC LLL +FV R KEEE    +  + + V V  G     VL+V+LP    +G+LR E++RR R+ AEF++L+R + R+  T  E L+ D  SLEA  L
Sbjct:   50 WVRHGMDLDGLDTLWEVVLDAAGSQASLAASDLIVELHLRLGPKLKSKAARIGAGFVDTCLHYLQVSVSRMRSLRGRSADAXXXXXXXXXXSSEED----TAVGVA-DSGRMMGGASSRSTSVEGRDVTRAKQLEAEHQGGVVVGSGRGXXXXXXXXXXXXSPQAQIRSL-----------------------------YRRAGRCILLLAKFVTRSKEEENGDASGTTTVRVSVEVGPDRVPVLDVRLPLNTVLGDLRCEVARRFRVQAEFLELARVVRRKGNTTTEVLDQDGASLEALGL 317          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9853.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU88_ECTSI6.960e-2632.01Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE1.190e-2531.46USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 577..643
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 398..427
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 520..564
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 484..644
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 400..427
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9853contigC-tenellus_contig9853:2..5766 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9853.1.1mRNA_C-tenellus_contig9853.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig9853 2..5766 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig9853.1.1 ID=prot_C-tenellus_contig9853.1.1|Name=mRNA_C-tenellus_contig9853.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=801bp
GQDKRPSTTQTQGKGQGGMTSWVRHVMELQGMDTLWGIALDATDTDVSFA
ASTLLIDLHYRLGPKLSPRGAKIRGQFVNTCLGRVAESLPVIVALKKLDE
QEGGGSITLRGVSISSSALLHQHQTTRDSVASVTATKVEKRDGQNDQNDT
AGGTSPKGRVESLSSTSATATALGTWAVTSAPGCKGMDTVAHTRRVGRCA
LLLKRFVDRGKEEEASVAAESVITVEVRAGRQWEAVLEVQLPEQVTVGEL
RWEISRRLRIPAEFIDLSRQINRRNVTVLETLEPDSTSLEAANLAPFVPL
PPPTATNKGGAATPPPGIGANPPTAPVSVSHSAAPAGTGVVPATGGSGVG
WSRERHVSVIASLTAAATRSPNLWTGHPEVTVAAAMAAGISLRRLQMRTG
MADESQQANHQSSSSVLTTPSSVSPKPLPDLITSDHLMEGWGVEGLPNTW
RCLAIPEAQETGVKVLHEGARGMMLASLHPLLEPQNEEGGGVGEGAWGET
GAGAAGTAEPAAGDTKTLRKISMRISSASSLVAGKPGGNGGSNTNSNSSS
MIQKSQTSSFASLPRPSLRGLREQLTSYPGPSLSSGLGSSNSQASGSRKQ
AMQQQQSAVLSQGPIDSVHTPGATTSRHQRKFQSLSPPRNSYHLNSAPAP
VREAPPLLPCQRTAAVGGWGLIAAALEEEEEDGEDGEEKQVGGKGKGAPC
TPAPWLLMPPPPPSPPLPHKPEMLLLLWDNPRASMLSLSDELGAGRGGMG
GGGNAVQQRLVSVDAPVPSVGPGAVLVHNDGGSSSGLVAGGTTGTTVGGG
G
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