prot_C-tenellus_contig9624.1.2 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig9624.1.2
Unique Nameprot_C-tenellus_contig9624.1.2
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length481
Homology
BLAST of mRNA_C-tenellus_contig9624.1.2 vs. uniprot
Match: D8LL22_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL22_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.110e-63
Identity = 161/426 (37.79%), Postives = 213/426 (50.00%), Query Frame = 0
Query:   47 LLLSLAADWLTPGS-SLVIEEPIPRALYHVPAAFGPDVAEVTPPLVSRPLIGTVPRDACVLPSNRRDIGVKGAIALVERGGCNFTQKVQNAQQAGASAVVVTDSNISEVAFDEWAITMSGSDEGTAGITIPSVFVSGKDGESLWAYSDGHAAWHGAGSGQGGGITVTLNSTGRVPPHGRGSMGPLETLGVYLIVSFLLVTVSGLVGLIVAVSITCYRRSYRSWAMKKLAVFKFRREESSVTVTGSSRKDHRGNVQGFRNPRDGRARERGHVSIANTGKGAGVSDLIRPSEQKDGHSEHCSTSSESAHTHEAGTVDGSNGDKLVVNEQRGMVKKTKEEMASGKDKACSKGKTVAGDGDGVQASTAAVAVEAFLDR-GHDMCAICLDSYEEGEALTALPCSHAYHTACIRPWLTARSGLCPMCKKEAF 470
            +L++     L P +  LVIEEP      HV AAFGPDV    PP+ SRPL+   PRD CV   N  D   +GAIALVERG CNFTQKV +AQ AGASAVVVTD+     A D+W + M G  E T GI IP+V VS   GE LW+    + +W     G+ G +  ++ + G +    R  +G LE LG+YL++S LL+  SG+ GL+ A+  T Y+R YR+ AM+KL  F FRR     T+   S  D  G                   S +N+G+ +G                               TVD + G    +    G      E+ +S  D                           F+ R   D+CAICL++YE+G++LT LPC H++HT CIRPWL+ +S LCPMCK EAF
Sbjct:   93 VLVTTLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMD---EGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTP----ATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWS----NRSWL---PGRQGRLRASVGAAGHIVMAAR-PVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRRPPPPTLGNQS--DPAG------------------TSSSNSGRASG-------------------------------TVDATTGQASSLGNGTGSA--ASEDNSSSND-------------------------NGFMRREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAF 425          
BLAST of mRNA_C-tenellus_contig9624.1.2 vs. uniprot
Match: A0A4D9CZZ7_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZZ7_9STRA)

HSP 1 Score: 176 bits (447), Expect = 9.190e-46
Identity = 151/449 (33.63%), Postives = 213/449 (47.44%), Query Frame = 0
Query:   59 GSSLVIEEPIPRALYHVPAAFGPDVAEVTPPLVSRPLIGTVPRDACV-----------------LPSNRRDIGVKGAIALVERGGCNFTQKVQNAQQAGASAVVVTDSNISEVAFDEWAITMSGSDEGTAGITIPSVFVSGKDGESLW-AYSDGHAAWHGAGSGQGGGITVTLNSTGRVPPHGRGSMGPLETLGVYLIVSFLLVTVSGLVGLIVAVSITCYRRSYRSWAMKKLAVFKFRREE-SSVTVTGSSRKDHRGNVQGFRNPRDGRARERGHVSIANTGKGA----GVSDLIRPSEQKDGHSEHCSTSSESAHTHEAGTVDGSNGDKLVVNEQRGMVK---KTKEEMASGKDKACSKGK------TVAGDGDGVQASTAAVAVEAFLDRGHD-----MCAICLDSYEEGEALTALPCSHAYHTACIRPWLTARSGLCPMCKKEAF 470
            G +LV+++P      HVPAAFGP++  +  PL +R L+   P DAC                   PS+     ++G IAL++R GCNFT+KV  AQQA A+ V+V DS     A + W   MSG +E T+ ITIPSVFVS   G SL  A +       G G      + VTLN TG V    +  +GP+ETL  Y++VS +L++ SG  GL++A+ +TCY+R++R  A++ L V K++R++ S   +   + KD   N     +    RA      S+ +  KG     G+  L R                                   V+++QR  +         + S       KG+       + GDG   +A TA   V A  D   +      CAICLD YE+G+ L  LPC H YH  CI PWL  +S  CPMCK+  F
Sbjct:   20 GRALVVDQPCCSKHLHVPAAFGPNILGLESPLHARQLVMVEPEDACSDLFPRRASYQDSFFSSSSPSSLSAPSLRGKIALIKRNGCNFTEKVWRAQQAEAAGVIVYDS----AARERWGTIMSGVEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTK-QIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKKVSQQPLLTYNSKDKGSNASTSPSAPLSRASP---TSLPDRRKGLRGLWGLLSLRR-----------------------------------VMDKQRSRIPLPLPAHPHLESLPASGLGKGRGGRFPCPLTGDG---EAPTAGEVVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCF 422          
BLAST of mRNA_C-tenellus_contig9624.1.2 vs. uniprot
Match: W7TBK1_9STRA (Protease-associated RING/U-box zinc finger-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBK1_9STRA)

HSP 1 Score: 170 bits (430), Expect = 5.660e-43
Identity = 147/430 (34.19%), Postives = 204/430 (47.44%), Query Frame = 0
Query:   76 PAAFGPDVAEVTPPLVSRPLIGTVPRDACV-----------------LPSNRRDIGVKGAIALVERGGCNFTQKVQNAQQAGASAVVVTDSNISEVAFDEWAITMSGSDEGTAGITIPSVFVSGKDGESLW-AYSDGHAAWHGAGSGQGGGITVTLNSTGRVPPHGRGSMGPLETLGVYLIVSFLLVTVSGLVGLIVAVSITCYRRSYRSWAMKKLAVFKFRREE-SSVTVTGSSRKDHRGNVQGFRNPRDGRARERGHVSIANTGKGA----GVSDLIRPSEQKDGHSEHCSTSSESAHTHEAGTVDGSNGDKLVVNEQRGMVK-------KTKEEMASGKDKACSKGKTVAGDGDGVQASTAAVAVEAFLDRGHD-----MCAICLDSYEEGEALTALPCSHAYHTACIRPWLTARSGLCPMCKKEAF 470
            PAAFGP++  +  PL +R L+   P DAC                   PS+     ++G IAL++R GCNFT+KV  AQQA A+ V+V DS     A + W   MSG +E T+ ITIPSVFVS   G SL  A +       G G      + VTLN TG V    +  +GP+ETL  Y++VS +L++ SG  GL++A+ +TCY+R++R  A++ L V K++R++ S   +   + KD   +     +    RA      S+ +  KG     G+  L R                                   V+N+QR  +        + +   ASG  KA          GDG +A TA   V A  D   +      CAICLD YE+G+ L  LPC H YH  CI PWL  +S  CPMCK+  F
Sbjct:    9 PAAFGPNILGLESPLHARELVMVEPEDACSDLFPRRASYQDSFFSSSSPSSLSAPSLRGRIALIKRNGCNFTEKVWRAQQAEAAGVIVYDS----AARERWGTIMSGVEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTK-QIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKKVSQQPLLAYNSKDKGSSASTSPSALLSRASP---TSLPDRRKGLRGLWGLLSLRR-----------------------------------VINKQRSRIPLPLPAHPRLESVPASGLGKARGGRSPCPLTGDG-EAPTACEGVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCF 394          
BLAST of mRNA_C-tenellus_contig9624.1.2 vs. uniprot
Match: A0A7S2RLQ5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLQ5_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.120e-13
Identity = 82/260 (31.54%), Postives = 122/260 (46.92%), Query Frame = 0
Query:   56 LTPGSSLVIEEPIPRALYHVPAAFG--PDVAEVTPPLVSRPLIGTVPRDACVLPSNR--------RDIGVKGAIAL-VERGGCNFTQKVQNAQQAGASAVVVTDSNISEVAFDEWAITMSGSDEGTAGITIPSVFVSGKDGESLWAYSDGHAAWHGAGSGQ---------GGGIT--------VTLNSTGRVPPHGRGSMGPLETLGVYLIVSFLLVTVSGLVGLIVAVSITCYRRSYRSWAMKKLAVFKFRREESSVTV 287
            L+PG+++           HVPAAFG   DV  +        L+   P+  C   S             G++   AL ++RG CNFT KV  AQ  GA+A ++ D    +   D W +TMS  D+    ++IPS+FVS + G+ LW      A  HG G G          G G T        V++N+TG V    +  + PLET  +Y++VS  L+T+S  + L +A+ +  Y +  R  A+  L  FK+   + S TV
Sbjct:   65 LSPGAAV-------EQFSHVPAAFGLHHDVTNLR-------LVPAEPKHGCECASGECLGRPAPVSPFGLEDGFALLIQRGQCNFTDKVIWAQHRGAAAAIICDDQPRD---DRWEVTMSSQDQTPVPVSIPSIFVSYRTGQRLWQA----AQIHGTGGGMTQRWRLLLSGVGFTAAGMRFPRVSVNATGNVMVSMQ-LVRPLETFIIYVVVSLALLTLSACLWLSLALGLAWYTQLQRRRALMALHRFKY---DPSTTV 299          
BLAST of mRNA_C-tenellus_contig9624.1.2 vs. uniprot
Match: UPI0007ACC86A (E3 ubiquitin-protein ligase RNF13-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007ACC86A)

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-13
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0
Query:  421 HDMCAICLDSYEEGEALTALPCSHAYHTACIRPWLTARSGLCPMCKKEAFPPKG 474
            +D+CAICLD YEEG+ L  LPCSHAYH+ C+ PWLT     CP+CK++  P  G
Sbjct:   23 YDVCAICLDEYEEGDKLRVLPCSHAYHSKCVDPWLTKTKKTCPVCKQKVVPADG 76          
BLAST of mRNA_C-tenellus_contig9624.1.2 vs. uniprot
Match: A0A6F9ALP9_9TELE (RING-type domain-containing protein n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F9ALP9_9TELE)

HSP 1 Score: 78.6 bits (192), Expect = 1.290e-13
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0
Query:  421 HDMCAICLDSYEEGEALTALPCSHAYHTACIRPWLTARSGLCPMCKKEAFPPKG 474
            +D+CAICLD YEEG+ L  LPCSHAYH  C+ PWLT     CP+CK++  P  G
Sbjct:    9 YDVCAICLDEYEEGDKLRVLPCSHAYHNKCVDPWLTKTKKTCPVCKQKVVPSAG 62          
BLAST of mRNA_C-tenellus_contig9624.1.2 vs. uniprot
Match: A0A5C6MT45_9TELE (E3 ubiquitin-protein ligase RNF13 n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6MT45_9TELE)

HSP 1 Score: 80.9 bits (198), Expect = 1.410e-13
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0
Query:  416 FLDRGHDMCAICLDSYEEGEALTALPCSHAYHTACIRPWLTARSGLCPMCKKEAFPPKG 474
            F    +D+CAICLD YEEG+ L  LPCSHAYH+ C+ PWLT     CP+CK++  P +G
Sbjct:   97 FQGDSYDVCAICLDEYEEGDKLRVLPCSHAYHSKCVDPWLTKTKKTCPVCKQKVVPSQG 155          
BLAST of mRNA_C-tenellus_contig9624.1.2 vs. uniprot
Match: UPI0004D09F09 (E3 ubiquitin-protein ligase RNF13-like n=1 Tax=Galeopterus variegatus TaxID=482537 RepID=UPI0004D09F09)

HSP 1 Score: 78.6 bits (192), Expect = 1.560e-13
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 0
Query:  421 HDMCAICLDSYEEGEALTALPCSHAYHTACIRPWLTARSGLCPMCKKEAFPPKG 474
            +D+CAICLD YE+G+ L  LPCSHAYH  C+ PWLT    +CP+CK++  P +G
Sbjct:   17 YDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKICPVCKQKVVPSQG 70          
BLAST of mRNA_C-tenellus_contig9624.1.2 vs. uniprot
Match: UPI0015E2435D (E3 ubiquitin-protein ligase RNF13-like n=1 Tax=Morone saxatilis TaxID=34816 RepID=UPI0015E2435D)

HSP 1 Score: 77.8 bits (190), Expect = 1.690e-13
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0
Query:  421 HDMCAICLDSYEEGEALTALPCSHAYHTACIRPWLTARSGLCPMCKKEAFP 471
            +D+CAICLD YEEG+ L  LPCSHAYH+ C+ PWLT     CP+CK++  P
Sbjct:   19 YDVCAICLDEYEEGDKLRVLPCSHAYHSKCVDPWLTKTKKTCPVCKQKVVP 69          
BLAST of mRNA_C-tenellus_contig9624.1.2 vs. uniprot
Match: A0A2G9RLE2_LITCT (RING-type domain-containing protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RLE2_LITCT)

HSP 1 Score: 78.6 bits (192), Expect = 1.710e-13
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0
Query:  421 HDMCAICLDSYEEGEALTALPCSHAYHTACIRPWLTARSGLCPMCKKEAFPPKG 474
            +D+CA+CLD YEEG+ L  LPCSHAYH  C+ PWLT     CP+CK++  P +G
Sbjct:   18 YDVCAVCLDEYEEGDKLRVLPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQG 71          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9624.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL22_ECTSI1.110e-6337.79RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A4D9CZZ7_9STRA9.190e-4633.63RING-type domain-containing protein n=1 Tax=Nannoc... [more]
W7TBK1_9STRA5.660e-4334.19Protease-associated RING/U-box zinc finger-contain... [more]
A0A7S2RLQ5_9STRA1.120e-1331.54Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
UPI0007ACC86A1.200e-1357.41E3 ubiquitin-protein ligase RNF13-like n=1 Tax=Sin... [more]
A0A6F9ALP9_9TELE1.290e-1357.41RING-type domain-containing protein n=1 Tax=Corego... [more]
A0A5C6MT45_9TELE1.410e-1354.24E3 ubiquitin-protein ligase RNF13 n=1 Tax=Takifugu... [more]
UPI0004D09F091.560e-1355.56E3 ubiquitin-protein ligase RNF13-like n=1 Tax=Gal... [more]
UPI0015E2435D1.690e-1358.82E3 ubiquitin-protein ligase RNF13-like n=1 Tax=Mor... [more]
A0A2G9RLE2_LITCT1.710e-1355.56RING-type domain-containing protein n=1 Tax=Lithob... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 424..465
e-value: 1.4E-8
score: 44.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 422..466
e-value: 1.8E-12
score: 47.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 424..466
score: 12.799
NoneNo IPR availableGENE3D3.50.30.30coord: 61..214
e-value: 6.2E-26
score: 93.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 296..316
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 333..349
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 287..364
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 116..474
NoneNo IPR availablePANTHERPTHR22765:SF34E3 UBIQUITIN-PROTEIN LIGASE RNF13coord: 116..474
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..232
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 262..481
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 233..261
NoneNo IPR availableCDDcd16665RING-H2_RNF13_likecoord: 422..467
e-value: 8.381E-21
score: 83.2259
NoneNo IPR availableCDDcd04818PA_subtilisin_1coord: 75..190
e-value: 1.93533E-24
score: 95.8585
NoneNo IPR availableSUPERFAMILY52025PA domaincoord: 111..201
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 411..472
IPR003137PA domainPFAMPF02225PAcoord: 89..188
e-value: 2.3E-15
score: 56.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 408..471
e-value: 2.1E-17
score: 64.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9624contigC-tenellus_contig9624:1097..5270 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9624.1.2mRNA_C-tenellus_contig9624.1.2Choristocarpus tenellus KU2346mRNAC-tenellus_contig9624 789..5270 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig9624.1.2 ID=prot_C-tenellus_contig9624.1.2|Name=mRNA_C-tenellus_contig9624.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=481bp
MHPVPHYKPPGRVQKQTGRTCFLGWDLQPRAIMLFGGGRRGGWMFLLLLS
LAADWLTPGSSLVIEEPIPRALYHVPAAFGPDVAEVTPPLVSRPLIGTVP
RDACVLPSNRRDIGVKGAIALVERGGCNFTQKVQNAQQAGASAVVVTDSN
ISEVAFDEWAITMSGSDEGTAGITIPSVFVSGKDGESLWAYSDGHAAWHG
AGSGQGGGITVTLNSTGRVPPHGRGSMGPLETLGVYLIVSFLLVTVSGLV
GLIVAVSITCYRRSYRSWAMKKLAVFKFRREESSVTVTGSSRKDHRGNVQ
GFRNPRDGRARERGHVSIANTGKGAGVSDLIRPSEQKDGHSEHCSTSSES
AHTHEAGTVDGSNGDKLVVNEQRGMVKKTKEEMASGKDKACSKGKTVAGD
GDGVQASTAAVAVEAFLDRGHDMCAICLDSYEEGEALTALPCSHAYHTAC
IRPWLTARSGLCPMCKKEAFPPKGSGFCLGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR003137PA_domain
IPR013083Znf_RING/FYVE/PHD