prot_C-tenellus_contig9514.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig9514.1.1
Unique Nameprot_C-tenellus_contig9514.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length265
Homology
BLAST of mRNA_C-tenellus_contig9514.1.1 vs. uniprot
Match: H3GIE4_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GIE4_PHYRM)

HSP 1 Score: 139 bits (349), Expect = 2.120e-35
Identity = 80/207 (38.65%), Postives = 122/207 (58.94%), Query Frame = 0
Query:   65 AGDISIGHQEPSTIAEALAGPDAEHWKKAMEQEMEGQQTKGTFREGESLLPGRRPVKTRFIFKIKRTAHGDIERYKARLVARGFSKQEGVDYFSTFSPVVGFDVIRAVLATAANRNWIINSLDFTQAYLNAPLPEDVWLQVPNG-------SIVKAARAISGLKQSAMEWYKEPKGTILAERWSISDFDACLYVKRSEDGRVAVLFH 264
            A D+S    EP+T  EA+ GPD  HW+KA+  E++  + +G FR  + L  G+R + T+++FKIKR A G IE+YKARLVA+GF ++ G+DY  TFSPVV +  +R ++A A    W ++ LD   A+L   + E V+  VP G         ++  +AI GLKQ++  W +     + +  + +S FD CLY+K  +   V VL +
Sbjct:  105 AADLS----EPTTFQEAVNGPDQVHWRKAIRAELKSMRLRGVFRAAK-LPSGQRAIGTKWVFKIKRKADGSIEKYKARLVAKGFKQKYGIDYTETFSPVVKYVTLRIIIAIAKYFGWPLDQLDVVTAFLYGVMKEVVFCVVPEGVELDGGFDCLELVKAIYGLKQASRVWNETFDEFMCSIGFQVSAFDPCLYIKVVDGHCVLVLVY 306          
BLAST of mRNA_C-tenellus_contig9514.1.1 vs. uniprot
Match: A0A0A9WI29_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WI29_LYGHE)

HSP 1 Score: 139 bits (351), Expect = 2.630e-35
Identity = 71/197 (36.04%), Postives = 116/197 (58.88%), Query Frame = 0
Query:   74 EPSTIAEALAGPDAEHWKKAMEQEMEGQQTKGTFREGESLLPGRRPVKTRFIFKIKRTAHGDIERYKARLVARGFSKQEGVDYFSTFSPVVGFDVIRAVLATAANRNWIINSLDFTQAYLNAPLPEDVWLQVPNG------SIVKAARAISGLKQSAMEWYKEPKGTILAERWSISDFDACLYVKRSEDGRVAVLFH 264
            EP T  +A+ GP+++ WK AME+E+   +    + E   L PG+  + ++++FKIK  A G +ERYKARLVA+GF+++ GVDY  T+SPV+    IR +   A N NWII+ +D   AYLN  L E+++++ P+G       + +  R++ GLKQS   WY++    +L    +    + C+Y +R  +    +L +
Sbjct:   25 EPKTFKQAMEGPESDLWKAAMEEELTSLEVMKVW-EFTELPPGKTAIGSKWVFKIKYMADGTVERYKARLVAQGFTQKPGVDYEETYSPVISLPAIRLLFKLAVNNNWIIHQMDVKTAYLNGELKEEIYMKCPDGITGAEGKVCRLLRSLYGLKQSGRSWYEKLDEKLLEGGMNKCKSEPCIYYRRCNENVKIILVY 220          
BLAST of mRNA_C-tenellus_contig9514.1.1 vs. uniprot
Match: A0A1R3GJB7_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3GJB7_COCAP)

HSP 1 Score: 143 bits (361), Expect = 4.210e-35
Identity = 79/190 (41.58%), Postives = 113/190 (59.47%), Query Frame = 0
Query:   74 EPSTIAEALAGPDAEHWKKAMEQEMEGQQTKGTFREGESLLPGRRPVKTRFIFKIKRTAHGDIERYKARLVARGFSKQEGVDYFSTFSPVVGFDVIRAVLATAANRNWIINSLDFTQAYLNAPLPEDVWLQVPNGSIVKAA--------RAISGLKQSAMEWYKEPKGTILAERWSISDFDACLYVKRSE 255
            EP T  EAL+ P  + W  AM  EME  +T   + +   L PGR+ +  +++ K+KR A G IERYKARLVA+G+++QEGVDY  TFSPVV F  IR +LA  AN +  +  +D   A+LN  L E++++  P G + K          R+I GLKQS+ +WY      I+   + + + D C+YVKRS+
Sbjct:  757 EPKTFKEALSSPVVQEWTNAMNDEMESMKTNHVW-DLVDLPPGRKTIGNKWVLKVKRMADGSIERYKARLVAKGYTQQEGVDYEETFSPVVRFASIRLILAIVANFDLELYQMDVKTAFLNGELDEEIYMDQPEGFVAKGQERKVCKLKRSIYGLKQSSRQWYLRFHQAIIQNGFEMIEEDHCVYVKRSK 945          
BLAST of mRNA_C-tenellus_contig9514.1.1 vs. uniprot
Match: A0A8J4G2Q3_9CHLO (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G2Q3_9CHLO)

HSP 1 Score: 140 bits (352), Expect = 5.050e-35
Identity = 82/203 (40.39%), Postives = 118/203 (58.13%), Query Frame = 0
Query:   74 EPSTIAEALAGPDAEHWKKAMEQEMEGQQTKGTFR-----EGESLLPGRRPVKTRFIFKIKRTAHGDIERYKARLVARGFSKQEGVDYFSTFSPVVGFDVIRAVLATAANRNWIINSLDFTQAYLNAPLPEDVWLQVPNG-------SIVKAARAISGLKQSAMEWYKEPKGTILAERWSISDFDACLYVKRSEDGRVAVLFH 264
            EPST AEA  GP AE WKKAM++E+  Q   GT+      EG  LLP       R+++K+KR A G+IER+KARLVA+G+ ++ G+DY   F+P   F  +RA+LA AA +   I+ LD + A+LN  L E++W+Q P G          +  R+I GLKQ+   WY +    +    +  S  D  L++K+ E+G V +L H
Sbjct:  102 EPSTYAEATNGPHAEEWKKAMDEEIAAQLANGTWELARPPEGTRLLP------CRWVYKVKRGADGEIERFKARLVAKGYEQRAGIDYGELFAPTSRFASLRALLAVAAAKGMPIHQLDVSTAFLNGELEEELWMQQPPGYESKDPNQACRLKRSIYGLKQAPRCWYVKLVAALDKLGFKPSQADPALFIKKDENGIVYLLVH 298          
BLAST of mRNA_C-tenellus_contig9514.1.1 vs. uniprot
Match: A0A6A3HS94_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A6A3HS94_9STRA)

HSP 1 Score: 143 bits (360), Expect = 5.530e-35
Identity = 82/207 (39.61%), Postives = 123/207 (59.42%), Query Frame = 0
Query:   65 AGDISIGHQEPSTIAEALAGPDAEHWKKAMEQEMEGQQTKGTFREGESLLPGRRPVKTRFIFKIKRTAHGDIERYKARLVARGFSKQEGVDYFSTFSPVVGFDVIRAVLATAANRNWIINSLDFTQAYLNAPLPEDVWLQVPNG-------SIVKAARAISGLKQSAMEWYKEPKGTILAERWSISDFDACLYVKRSEDGRVAVLFH 264
            AGD+S    EP+T  EA+ GPD  HW+KA+  E+E  + +G FR  + L  G+R + T+++FKIKR A G IE+YKARLVA+GF ++ G+DY  TFSPVV +  +R ++A A    W ++ LD   A+L   + E V+  VP G         ++  +AI GLKQ++  W +     + +  + +S FD CLY+K  +   V VL +
Sbjct:  685 AGDLS----EPTTFQEAVNGPDQVHWRKAIRAELESMRLRGVFRAAK-LPNGQRAIGTKWVFKIKRKADGSIEKYKARLVAKGFKQKYGIDYTETFSPVVKYVTLRMIIAIAKYFGWPLDQLDVVTAFLYGIMKELVFCAVPEGVDLDGDFDCLELVKAIYGLKQASRVWNETFDDFVCSIGFQVSAFDPCLYIKVVDGHCVLVLVY 886          
BLAST of mRNA_C-tenellus_contig9514.1.1 vs. uniprot
Match: H3H6T8_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H6T8_PHYRM)

HSP 1 Score: 139 bits (349), Expect = 6.020e-35
Identity = 80/207 (38.65%), Postives = 122/207 (58.94%), Query Frame = 0
Query:   65 AGDISIGHQEPSTIAEALAGPDAEHWKKAMEQEMEGQQTKGTFREGESLLPGRRPVKTRFIFKIKRTAHGDIERYKARLVARGFSKQEGVDYFSTFSPVVGFDVIRAVLATAANRNWIINSLDFTQAYLNAPLPEDVWLQVPNG-------SIVKAARAISGLKQSAMEWYKEPKGTILAERWSISDFDACLYVKRSEDGRVAVLFH 264
            A D+S    EP+T  EA+ GPD  HW+KA+  E++  + +G FR  + L  G+R + T+++FKIKR A G IE+YKARLVA+GF ++ G+DY  TFSPVV +  +R ++A A    W ++ LD   A+L   + E V+  VP G         ++  +AI GLKQ++  W +     + +  + +S FD CLY+K  +   V VL +
Sbjct:  172 AADLS----EPTTFQEAVNGPDQVHWRKAIRAELKSMRLRGVFRAAK-LPSGQRAIGTKWVFKIKRKADGSIEKYKARLVAKGFKQKYGIDYTETFSPVVKYVTLRMIIAIAKYFGWPLDQLDVVTAFLYGVMKEVVFCVVPEGVELDGGFDCLELVKAIYGLKQASRVWNETFDEFMCSIGFQVSAFDPCLYIKVVDGQCVLVLVY 373          
BLAST of mRNA_C-tenellus_contig9514.1.1 vs. uniprot
Match: H3HA46_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA46_PHYRM)

HSP 1 Score: 139 bits (349), Expect = 1.300e-34
Identity = 80/207 (38.65%), Postives = 122/207 (58.94%), Query Frame = 0
Query:   65 AGDISIGHQEPSTIAEALAGPDAEHWKKAMEQEMEGQQTKGTFREGESLLPGRRPVKTRFIFKIKRTAHGDIERYKARLVARGFSKQEGVDYFSTFSPVVGFDVIRAVLATAANRNWIINSLDFTQAYLNAPLPEDVWLQVPNG-------SIVKAARAISGLKQSAMEWYKEPKGTILAERWSISDFDACLYVKRSEDGRVAVLFH 264
            A D+S    EP+T  EA+ GPD  HW+KA+  E++  + +G FR  + L  G+R + T+++FKIKR A G IE+YKARLVA+GF ++ G+DY  TFSPVV +  +R ++A A    W ++ LD   A+L   + E V+  VP G         ++  +AI GLKQ++  W +     + +  + +S FD CLY+K  +   V VL +
Sbjct:  182 AADLS----EPTTFQEAVNGPDQVHWRKAIRAELKSMRLRGVFRAAK-LPSGQRAIGTKWVFKIKRKADGSIEKYKARLVAKGFKQKYGIDYTETFSPVVKYVTLRMIIAIAKYFGWPLDQLDVVTAFLYGVMKEVVFCVVPEGVELDGGFDCLELVKAIYGLKQASRVWNETFDEFMCSIGFQVSAFDPCLYIKVVDGQCVLVLVY 383          
BLAST of mRNA_C-tenellus_contig9514.1.1 vs. uniprot
Match: H3H220_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H220_PHYRM)

HSP 1 Score: 140 bits (352), Expect = 1.560e-34
Identity = 80/207 (38.65%), Postives = 122/207 (58.94%), Query Frame = 0
Query:   65 AGDISIGHQEPSTIAEALAGPDAEHWKKAMEQEMEGQQTKGTFREGESLLPGRRPVKTRFIFKIKRTAHGDIERYKARLVARGFSKQEGVDYFSTFSPVVGFDVIRAVLATAANRNWIINSLDFTQAYLNAPLPEDVWLQVPNG-------SIVKAARAISGLKQSAMEWYKEPKGTILAERWSISDFDACLYVKRSEDGRVAVLFH 264
            A D+S    EP+T  EA+ GPD  HW+KA+  E++  + +G FR  + L  G+R + T+++FKIKR A G IE+YKARLVA+GF ++ G+DY  TFSPVV +  +R ++A A    W ++ LD   A+L   + E V+  VP G         ++  +AI GLKQ++  W +     + +  + +S FD CLY+K  +   V VL +
Sbjct:   27 AADLS----EPTTFQEAVNGPDQVHWRKAIRAELKSMRLRGVFR-ADKLPTGQRAIGTKWVFKIKRKADGSIEKYKARLVAKGFKQKYGIDYTETFSPVVKYVTLRMIIAIAKYFGWPLDQLDVVTAFLYGVMKEVVFCVVPEGVELDGGFDCLELVKAIYGLKQASRVWNETFDEFMCSIGFQVSAFDPCLYIKVVDGHCVLVLVY 228          
BLAST of mRNA_C-tenellus_contig9514.1.1 vs. uniprot
Match: A0A507DTC0_9FUNG (DNA-directed DNA polymerase n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DTC0_9FUNG)

HSP 1 Score: 140 bits (354), Expect = 2.360e-34
Identity = 72/193 (37.31%), Postives = 125/193 (64.77%), Query Frame = 0
Query:   74 EPSTIAEALAGPDAEHWKKAMEQEMEGQQTKGTF-REGESLLPGRRPVKTRFIFKIKRTAHGDIERYKARLVARGFSKQEGVDYFSTFSPVVGFDVIRAVLATAANRNWIINSLDFTQAYLNAPLPEDVWLQVPNG---SIVKAARAISGLKQSAMEWYKEPKGTILAERWSISDFDACLYVKRSEDGRVAVL 262
            EP T  EA+  P A+ WK+A++ E+   +T  T+  +     PG   V ++++FK+KR A G I+++KARLVARGF+++EG+D+  T++PVV F+ +RA+LA AA  +  ++ +D   A+LN  L  ++W+++P G   ++VK  R++ GLKQS   W K     +    +S+S+FD  LY+KR+++ ++ ++
Sbjct:  202 EPVTYQEAVNSPYAKEWKQAIDAELSSHRTNKTWDTDTMQTPPGTHLVDSKWVFKVKRNADGSIKKFKARLVARGFTQREGIDFNETYAPVVKFNTLRALLALAAKLDLHVHQMDVITAFLNGDLDVEIWMRLPAGVADNVVKLRRSLYGLKQSPHLWNKVLDSFLQQLGFSVSEFDTALYIKRTDNTKILIV 394          
BLAST of mRNA_C-tenellus_contig9514.1.1 vs. uniprot
Match: A0A2K3PAA5_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PAA5_TRIPR)

HSP 1 Score: 140 bits (354), Expect = 3.600e-34
Identity = 76/198 (38.38%), Postives = 122/198 (61.62%), Query Frame = 0
Query:   74 EPSTIAEALAGPDAEHWKKAMEQEMEGQQTKGTFREGESLLPGRRPVKTRFIFKIKRTAHGDIERYKARLVARGFSKQEGVDYFSTFSPVVGFDVIRAVLATAANRNWIINSLDFTQAYLNAPLPEDVWLQVPNG-------SIVKAARAISGLKQSAMEWYKEPKGTILAERWSISDFDACLYVKRSEDGRVAVLFH 264
            EP++  EA      EHW KAM+ E++  +   T+    SL  G +P+ +++++KIKR + G IERYKARLVA+G+++ EG+DYF TFSPV     IR VLA A+ RNW ++ LD   A+L+  L EDV++Q+P G        + K  +++ GLKQ++ +WY++    +++  +     D  L+VK++ D   A+L +
Sbjct:  944 EPTSYFEACKH---EHWVKAMQSELQALEQNKTWTIV-SLPTGVKPIGSKWVYKIKRKSDGSIERYKARLVAKGYNQVEGIDYFETFSPVAKMTTIRVVLAIASIRNWFVHQLDVNNAFLHGELCEDVYMQIPQGLEGFATDKVCKLTKSLYGLKQASRKWYEKLSQFLISHHFIQVPSDPTLFVKKTSDSFTALLVY 1137          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9514.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3GIE4_PHYRM2.120e-3538.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0A9WI29_LYGHE2.630e-3536.04Retrovirus-related Pol polyprotein from transposon... [more]
A0A1R3GJB7_COCAP4.210e-3541.58Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A8J4G2Q3_9CHLO5.050e-3540.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3HS94_9STRA5.530e-3539.61Retrovirus-related Pol polyprotein from transposon... [more]
H3H6T8_PHYRM6.020e-3538.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3HA46_PHYRM1.300e-3438.65Integrase catalytic domain-containing protein n=1 ... [more]
H3H220_PHYRM1.560e-3438.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A507DTC0_9FUNG2.360e-3437.31DNA-directed DNA polymerase n=1 Tax=Powellomyces h... [more]
A0A2K3PAA5_TRIPR3.600e-3438.38Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 116..261
e-value: 2.8E-27
score: 95.9
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 73..260

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9514contigC-tenellus_contig9514:4306..5540 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9514.1.1mRNA_C-tenellus_contig9514.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig9514 3910..5600 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig9514.1.1 ID=prot_C-tenellus_contig9514.1.1|Name=mRNA_C-tenellus_contig9514.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=265bp
MGAARSQLVKAGLGDEYWFFAITDVAFKTGGMPHEYLGGETPCKQNIVNL
LRSSTDNAYCLMGMAGDISIGHQEPSTIAEALAGPDAEHWKKAMEQEMEG
QQTKGTFREGESLLPGRRPVKTRFIFKIKRTAHGDIERYKARLVARGFSK
QEGVDYFSTFSPVVGFDVIRAVLATAANRNWIINSLDFTQAYLNAPLPED
VWLQVPNGSIVKAARAISGLKQSAMEWYKEPKGTILAERWSISDFDACLY
VKRSEDGRVAVLFH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2