prot_C-tenellus_contig9513.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig9513.2.1
Unique Nameprot_C-tenellus_contig9513.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length327
Homology
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A6D2K628_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2K628_9BRAS)

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-8
Identity = 43/144 (29.86%), Postives = 72/144 (50.00%), Query Frame = 0
Query:    4 GAVQEMTRTGEPQYNGVVERRISQVDSGARASIYSAGLEEKMWLWGEAYNHSAFILNRSATAANKGISPYKALYGEIGSLVSIPAFGTPGYYKSSPG--HKLGSHGQQCIVVGISEKQPRGTFRVLDFTTNRVIQRANIYWHPT 145
            G + + +    PQ NG  ER+   + + ARA ++ + L  K W  GE+   +A+++NR+ T    G SPY+ LY +   +  I  FG+  Y K  PG   K     ++C+ +G    Q +G +RVLD  T  +    ++ +  T
Sbjct:  584 GILHQTSCVNTPQQNGRAERKHHHILNIARALLFQSHLPTKFW--GESILTAAYLINRTPTPTLDGKSPYQVLYNKDPGISHIRIFGSLCYAKRQPGTTDKFDKRSKRCVFIGYPHAQ-KG-WRVLDLDTEEIFVSRDVIFDET 723          
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: UPI000D6265D0 (uncharacterized protein LOC107174989 n=1 Tax=Citrus sinensis TaxID=2711 RepID=UPI000D6265D0)

HSP 1 Score: 61.6 bits (148), Expect = 9.410e-7
Identity = 38/116 (32.76%), Postives = 61/116 (52.59%), Query Frame = 0
Query:    1 MEMGAVQEMTRTGEPQYNGVVERRISQVDSGARASIYSAGLEEKMWLWGEAYNHSAFILNRSATAANKGISPYKALYGEIGSLVSIPAFGTPGYYKSSP--GHKLGSHGQQCIVVG 114
            +E G + + +  G PQ NG VER+   + + ARA  + A L  K W  GE    +A+++NR+ +   +G + Y+ L+GE  S  +I  FG   Y  +    G K  S  ++CI +G
Sbjct:  518 VEKGVIHQTSCVGTPQQNGRVERKHRHILNVARALRFQANLPIKFW--GECILTAAYLINRTPSDLLQGKTLYEILFGETPSYKNIRVFGCLAYAHNQRHGGDKFASRSRKCIFIG 631          
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A2K3MWZ8_TRIPR (Retroelement pol polyprotein-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MWZ8_TRIPR)

HSP 1 Score: 61.6 bits (148), Expect = 9.860e-7
Identity = 41/142 (28.87%), Postives = 69/142 (48.59%), Query Frame = 0
Query:    4 GAVQEMTRTGEPQYNGVVERRISQVDSGARASIYSAGLEEKMWLWGEAYNHSAFILNRSATAANKGISPYKALYGEIGSLVSIPAFGTPGYYKSSPGH--KLGSHGQQCIVVGISEKQPRGTFRVLDFTTNRVIQRANIYWH 143
            G + E +  G PQ N  VER+   + + ARA  + A L   +  WGE    + +++NR+ +  N G++PY+ L G+  S   I  FG   Y K+S     K  S  ++C+ VG  + Q   T  V +  T  +    ++ ++
Sbjct:  638 GILHETSCVGTPQQNARVERKHRHILNVARALRFQANLP--ISFWGECVLTATYLINRTPSMINDGLTPYEKLLGKPSSYEHIKTFGCLCYVKNSNKQQDKFDSRAEKCVFVGYPKGQKGWT--VYNLKTQEIYVSRDVVFY 775          
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: UPI00100E9B61 (DDE-type integrase/transposase/recombinase n=1 Tax=Enterobacter cloacae complex sp. GF14B TaxID=2511982 RepID=UPI00100E9B61)

HSP 1 Score: 60.1 bits (144), Expect = 2.890e-6
Identity = 82/339 (24.19%), Postives = 129/339 (38.05%), Query Frame = 0
Query:   15 PQYNGVVERRISQVDSGARASIYSAGLEEKMWLWGEAYNHSAFILNRSATAANKGISPYKALYGEIGSLVSIPAFGTPGY--YKSSPGHKLGSHGQQCIVVGISEKQPRGTFRVLDFTTNRVIQRANIYWHPTKDGRVRFPTSDLDRDYEDLDDTPGYILPPHVRRRTEEIQEMEGECNDDGITW--IEGGISDGDKSDDTWDNGELVEEIKDSIYDDNEAKENEDNXXXXXXGMDETKDSQCERELRRLSIGNGEDNIIPHRTRSGNTSAKACSRA-------------------------------EEMSGLLLNNVYVEAVLPPGRRAIDTKWIHK 318
            PQ NGV ER+   +   AR  + S  L    WL  EA   + ++LNR  T A + I+PY+A +    S+  +  FG   Y     +   KL     +CI VG S +  +G +R+    T R++   ++ +       +   T D +   +D+ DT   +LP      T  +   E      G++   I+  I+D D           V ++ D      E  ENE         +   +DS+              D  +  RTRSG+  A   S                                  E   L+ N+ +    LPPG++AI TKW++K
Sbjct:  665 PQQNGVAERKNRSLTEMARCMVKSQALPHSFWL--EAIMCATYVLNRCPTKALQSITPYEAWHDRKPSIEHMRVFGCLAYALVPQTQRKKLDDKAVKCIFVGYSAES-KG-YRLYHPQTKRILVSRDVVFVEDSVQPLLSCTRDSNVSSQDIYDT---LLPLFSGGNTN-VSSNEANVQPMGVSENVIDQPITDAD-----------VHDVLDE-----ERAENEQARGMPKWLVHTLRDSKL-------------DAPLSSRTRSGSRHASYASDCYALAVSSLHDVEEPLSFDEAQNSKNWMAAMQSEYDALIENDTWTLCDLPPGKKAIGTKWVYK 966          
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: UPI000E6F64D6 (uncharacterized protein LOC113273194 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F64D6)

HSP 1 Score: 58.2 bits (139), Expect = 1.200e-5
Identity = 39/136 (28.68%), Postives = 69/136 (50.74%), Query Frame = 0
Query:   15 PQYNGVVERRISQVDSGARASIYSAGLEEKMWLWGEAYNHSAFILNRSATAANKGISPYKALYGEIGSLVSIPAFGTPGYY--KSSPGHKLGSHGQQCIVVGISEKQPRG--TFRVLDFTTNRVIQRANIYWHPTK 146
            PQ NG VER+   + + ARA  + A L ++ W  GE    +A+++N + T      +PY+ L+G+      +  FG   Y   +SS G K  S G++C+ +G     P G   ++V D  T + +   ++ ++ T+
Sbjct:  416 PQQNGRVERKHQHIMNVARALRFQARLPKRFW--GECALTAAYLINCTPTPILNNKTPYEVLFGKPPLYKQLKVFGCLCYVHDQSSKGDKFASRGRRCVFLGY----PYGKKAWQVYDLDTRKFMVSRDVKFYETQ 545          
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A2K3M6F0_TRIPR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M6F0_TRIPR)

HSP 1 Score: 56.2 bits (134), Expect = 3.730e-5
Identity = 34/118 (28.81%), Postives = 56/118 (47.46%), Query Frame = 0
Query:    4 GAVQEMTRTGEPQYNGVVERRISQVDSGARASIYSAGLEEKMWLWGEAYNHSAFILNRSATAANKGISPYKALYGEIGSLVSIPAFGTPGYY--KSSPGHKLGSHGQQCIVVGISEKQ 119
            G + + + T  PQ NGV ER+   +   AR+ + SA +  + W  GEA   S  ++NR  ++   G+SP++ LYG      S+  FG+  +        +KL      C+ +G    Q
Sbjct:   39 GTIHQSSCTDTPQQNGVAERKHRHIVETARSLLLSASVPCEFW--GEAILTSVHVINRIPSSITSGLSPFEKLYGSTPDYSSLKVFGSTCFVLRPQVERNKLSPRSTICVFLGYGAGQ 154          
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A396J586_MEDTR (Putative RNA-directed DNA polymerase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396J586_MEDTR)

HSP 1 Score: 55.1 bits (131), Expect = 6.280e-5
Identity = 40/117 (34.19%), Postives = 63/117 (53.85%), Query Frame = 0
Query:    4 GAVQEMTRTGEPQYNGVVERRISQVDSGARASIYSAGLEEKMWLWGEAYNHSAFILNRSATAANKGISPYKALYGEIGSLVS-IPAFGTPGYYK--SSPGHKLGSHGQQCIVVGISE 117
            G  +++T T  PQ NGV ER+   + +  R  +    L +  +LWGEA N +A+ILNRS T A K  +P +A + +I  +V  +  FG   +     +   KL +    C+++GISE
Sbjct:  207 GIKRQLTTTFTPQQNGVAERKNQTIMNMVRYMLSEKHLPK--FLWGEAVNWAAYILNRSPTLAVKDKTPEEA-WSDIKPVVHHLKVFGCVAHVHIPEAKRKKLDAKSFPCVMLGISE 320          
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Match: A0A396ICJ3_MEDTR (Putative RNA-directed DNA polymerase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396ICJ3_MEDTR)

HSP 1 Score: 55.8 bits (133), Expect = 6.680e-5
Identity = 35/113 (30.97%), Postives = 57/113 (50.44%), Query Frame = 0
Query:    4 GAVQEMTRTGEPQYNGVVERRISQVDSGARASIYSAGLEEKMWLWGEAYNHSAFILNRSATAANKGISPYKALYGEIGSLVSIPAFGTPGYYKSS--PGHKLGSHGQQCIVVG 114
            G V E +  G PQ NG VER+   + + ARA  +   L   M  WGE    + +++NR+ ++     +PY+ L+G++    ++  FG   Y  +    G K  S  ++CI VG
Sbjct:  150 GIVFETSCVGTPQQNGRVERKHQHIMNVARALRFQGHLP--MQFWGECVLTACYLINRTPSSVLNYKTPYEKLFGKVPKFDNMKIFGCLCYAHNQRRDGDKFASRSRKCIFVG 260          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9513.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6D2K628_9BRAS1.300e-829.86Integrase catalytic domain-containing protein n=1 ... [more]
UPI000D6265D09.410e-732.76uncharacterized protein LOC107174989 n=1 Tax=Citru... [more]
A0A2K3MWZ8_TRIPR9.860e-728.87Retroelement pol polyprotein-like n=1 Tax=Trifoliu... [more]
UPI00100E9B612.890e-624.19DDE-type integrase/transposase/recombinase n=1 Tax... [more]
UPI000E6F64D61.200e-528.68uncharacterized protein LOC113273194 n=1 Tax=Papav... [more]
A0A2K3M6F0_TRIPR3.730e-528.81Integrase catalytic domain-containing protein (Fra... [more]
A0A396J586_MEDTR6.280e-534.19Putative RNA-directed DNA polymerase n=1 Tax=Medic... [more]
A0A396ICJ3_MEDTR6.680e-530.97Putative RNA-directed DNA polymerase n=1 Tax=Medic... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..86
e-value: 2.0E-7
score: 32.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 201..254
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..231
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..80
score: 8.858
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9513contigC-tenellus_contig9513:3638..4787 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9513.2.1mRNA_C-tenellus_contig9513.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig9513 2280..5219 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig9513.2.1 ID=prot_C-tenellus_contig9513.2.1|Name=mRNA_C-tenellus_contig9513.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=327bp
MEMGAVQEMTRTGEPQYNGVVERRISQVDSGARASIYSAGLEEKMWLWGE
AYNHSAFILNRSATAANKGISPYKALYGEIGSLVSIPAFGTPGYYKSSPG
HKLGSHGQQCIVVGISEKQPRGTFRVLDFTTNRVIQRANIYWHPTKDGRV
RFPTSDLDRDYEDLDDTPGYILPPHVRRRTEEIQEMEGECNDDGITWIEG
GISDGDKSDDTWDNGELVEEIKDSIYDDNEAKENEDNNDGDDDGMDETKD
SQCERELRRLSIGNGEDNIIPHRTRSGNTSAKACSRAEEMSGLLLNNVYV
EAVLPPGRRAIDTKWIHKRRLTNLVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf