prot_C-tenellus_contig9472.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig9472.1.1
Unique Name	prot_C-tenellus_contig9472.1.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	317

Homology

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BLAST of mRNA_C-tenellus_contig9472.1.1 vs. uniprot
Match: D7FYP9_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYP9_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 5.620e-15
Identity = 50/95 (52.63%), Postives = 58/95 (61.05%), Query Frame = 0

Query:   41 AFKPRPAPALPAELSSLPKFVKCMKFKGRKAGYCFKKGKTGIGYYIDRVQIGNMNSRGIAKLT-TAAPPET---GKAKGSAETMNAIKGGGVMIR 131
            AFKPRP P LP  LSSLPKFVK   F GRK GY F +GK G+GYY+DRVQIG M  +  A+L  T  PP     G+A   A T  A   G V ++
Sbjct:   42 AFKPRPPPPLPEALSSLPKFVKKNNFSGRKLGYFFSRGKAGVGYYVDRVQIGAMGDKLRARLAATLKPPAAAGGGEATKPAGTKTAAGPGAVNVK 136

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig9472.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig9472.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FYP9_ECTSI	5.620e-15	52.63	DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 225..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 290..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..176

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig9472	contig	C-tenellus_contig9472:1621..2571 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig9472.1.1	mRNA_C-tenellus_contig9472.1.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig9472 1615..2571 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig9472.1.1 ID=prot_C-tenellus_contig9472.1.1|Name=mRNA_C-tenellus_contig9472.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=317bp
MAKGLIKSKGMGRVGGQRGKGRRGKKNFGLSSGPQGRAFPAFKPRPAPAL
PAELSSLPKFVKCMKFKGRKAGYCFKKGKTGIGYYIDRVQIGNMNSRGIA
KLTTAAPPETGKAKGSAETMNAIKGGGVMIREKGCRVSKGGEVETIKAMA
SQGVPKVEGKALQQRVDTDAEKATVGGKVEKGVSCNESGQNDVSDAGDDG
DSVVEEDDGLKGEDGSKEDDGHVESEESESDCPESEDEKEELEDRMEEDE
EDGGNQKDDSERDDSEGGESVGEDSEGGVECDEDEESGEESDKGKERSKV
DTSPEKVEDGEGIEDNK