mRNA_C-tenellus_contig9472.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9472.1.1
Unique NamemRNA_C-tenellus_contig9472.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9472.1.1 vs. uniprot
Match: D7FYP9_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYP9_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 5.820e-15
Identity = 50/95 (52.63%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:  127 AFKPRPAPALPAELSSLPKFVKCMKFKGRKAGYCFKKGKTGIGYYIDRVQIGNMNSRGIAKLT-TAAPPET---GKAKGSAETMNAIKGGGVMIR 399
            AFKPRP P LP  LSSLPKFVK   F GRK GY F +GK G+GYY+DRVQIG M  +  A+L  T  PP     G+A   A T  A   G V ++
Sbjct:   42 AFKPRPPPPLPEALSSLPKFVKKNNFSGRKLGYFFSRGKAGVGYYVDRVQIGAMGDKLRARLAATLKPPAAAGGGEATKPAGTKTAAGPGAVNVK 136
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9472.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYP9_ECTSI5.820e-1552.63DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9472contigC-tenellus_contig9472:1615..2571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FYP9
Preferred nameDDX47
PFAMsDEAD,Helicase_C
Model size958
Max annot lvl2759|Eukaryota
KEGG koko:K10352,ko:K14777
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
GOsGO:0000339,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0007166,GO:0008026,GO:0008135,GO:0008150,GO:0008152,GO:0008186,GO:0008219,GO:0008380,GO:0008625,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0010501,GO:0012501,GO:0016070,GO:0016072,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0022613,GO:0023052,GO:0030490,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0042623,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097190,GO:0097191,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue9.21e-16
EggNOG OGsCOG0513@1|root,KOG0330@2759|Eukaryota
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-26_004270.1
EC3.6.4.13
Descriptionhelicase activity
Cds size951
COG categoryL
BRITEko00000,ko00001,ko01000,ko03009,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790178.5668852-UTR-C-tenellus_contig9472:1614..16201680790178.5668852-UTR-C-tenellus_contig9472:1614..1620Choristocarpus tenellus KU2346UTRC-tenellus_contig9472 1615..1620 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790178.5800738-CDS-C-tenellus_contig9472:1620..25711680790178.5800738-CDS-C-tenellus_contig9472:1620..2571Choristocarpus tenellus KU2346CDSC-tenellus_contig9472 1621..2571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9472.1.1prot_C-tenellus_contig9472.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9472 1621..2571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9472.1.1

>prot_C-tenellus_contig9472.1.1 ID=prot_C-tenellus_contig9472.1.1|Name=mRNA_C-tenellus_contig9472.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=317bp
MAKGLIKSKGMGRVGGQRGKGRRGKKNFGLSSGPQGRAFPAFKPRPAPAL
PAELSSLPKFVKCMKFKGRKAGYCFKKGKTGIGYYIDRVQIGNMNSRGIA
KLTTAAPPETGKAKGSAETMNAIKGGGVMIREKGCRVSKGGEVETIKAMA
SQGVPKVEGKALQQRVDTDAEKATVGGKVEKGVSCNESGQNDVSDAGDDG
DSVVEEDDGLKGEDGSKEDDGHVESEESESDCPESEDEKEELEDRMEEDE
EDGGNQKDDSERDDSEGGESVGEDSEGGVECDEDEESGEESDKGKERSKV
DTSPEKVEDGEGIEDNK
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mRNA from alignment at C-tenellus_contig9472:1615..2571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9472.1.1 ID=mRNA_C-tenellus_contig9472.1.1|Name=mRNA_C-tenellus_contig9472.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=957bp|location=Sequence derived from alignment at C-tenellus_contig9472:1615..2571+ (Choristocarpus tenellus KU2346)
CTTTCGATGGCGAAGGGGCTCATCAAATCTAAGGGCATGGGTCGGGTGGG
AGGGCAACGTGGCAAGGGGAGGCGTGGGAAAAAAAACTTCGGGCTGTCTT
CTGGGCCACAGGGCAGGGCATTCCCAGCTTTCAAGCCACGCCCTGCCCCT
GCCCTACCAGCGGAGTTGTCATCCTTGCCAAAGTTCGTCAAATGCATGAA
ATTTAAGGGTCGGAAGGCTGGATACTGCTTCAAAAAGGGTAAAACAGGCA
TTGGATATTACATCGACCGCGTGCAGATTGGCAACATGAATTCAAGAGGT
ATCGCCAAACTGACTACAGCAGCTCCTCCTGAGACTGGCAAGGCTAAGGG
TTCTGCTGAGACGATGAATGCAATCAAGGGAGGAGGTGTCATGATTAGGG
AGAAGGGATGTCGTGTATCGAAGGGCGGAGAAGTGGAGACTATTAAGGCA
ATGGCAAGCCAGGGTGTACCTAAAGTGGAGGGTAAGGCCCTACAGCAACG
AGTTGACACTGATGCTGAGAAAGCTACTGTTGGCGGTAAGGTTGAGAAAG
GAGTATCATGCAATGAGAGTGGTCAGAACGATGTAAGCGATGCAGGCGAT
GATGGTGACAGCGTCGTGGAGGAGGATGATGGGTTGAAGGGGGAGGACGG
GTCGAAGGAGGACGACGGACACGTTGAGAGTGAAGAGAGCGAGAGCGACT
GCCCTGAGTCAGAGGATGAGAAAGAGGAGTTGGAAGACAGGATGGAGGAA
GACGAAGAAGATGGTGGAAATCAAAAGGATGATTCCGAGAGGGACGATTC
AGAGGGAGGAGAATCAGTGGGAGAAGACTCAGAGGGTGGGGTTGAATGTG
ACGAAGATGAAGAGTCCGGGGAGGAGAGTGACAAAGGCAAGGAACGGAGC
AAAGTCGACACCTCTCCCGAAAAAGTCGAGGATGGTGAGGGTATCGAAGA
CAACAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9472:1615..2571+

>mRNA_C-tenellus_contig9472.1.1 ID=mRNA_C-tenellus_contig9472.1.1|Name=mRNA_C-tenellus_contig9472.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=951bp|location=Sequence derived from alignment at C-tenellus_contig9472:1615..2571+ (Choristocarpus tenellus KU2346)
ATGGCGAAGGGGCTCATCAAATCTAAGGGCATGGGTCGGGTGGGAGGGCA
ACGTGGCAAGGGGAGGCGTGGGAAAAAAAACTTCGGGCTGTCTTCTGGGC
CACAGGGCAGGGCATTCCCAGCTTTCAAGCCACGCCCTGCCCCTGCCCTA
CCAGCGGAGTTGTCATCCTTGCCAAAGTTCGTCAAATGCATGAAATTTAA
GGGTCGGAAGGCTGGATACTGCTTCAAAAAGGGTAAAACAGGCATTGGAT
ATTACATCGACCGCGTGCAGATTGGCAACATGAATTCAAGAGGTATCGCC
AAACTGACTACAGCAGCTCCTCCTGAGACTGGCAAGGCTAAGGGTTCTGC
TGAGACGATGAATGCAATCAAGGGAGGAGGTGTCATGATTAGGGAGAAGG
GATGTCGTGTATCGAAGGGCGGAGAAGTGGAGACTATTAAGGCAATGGCA
AGCCAGGGTGTACCTAAAGTGGAGGGTAAGGCCCTACAGCAACGAGTTGA
CACTGATGCTGAGAAAGCTACTGTTGGCGGTAAGGTTGAGAAAGGAGTAT
CATGCAATGAGAGTGGTCAGAACGATGTAAGCGATGCAGGCGATGATGGT
GACAGCGTCGTGGAGGAGGATGATGGGTTGAAGGGGGAGGACGGGTCGAA
GGAGGACGACGGACACGTTGAGAGTGAAGAGAGCGAGAGCGACTGCCCTG
AGTCAGAGGATGAGAAAGAGGAGTTGGAAGACAGGATGGAGGAAGACGAA
GAAGATGGTGGAAATCAAAAGGATGATTCCGAGAGGGACGATTCAGAGGG
AGGAGAATCAGTGGGAGAAGACTCAGAGGGTGGGGTTGAATGTGACGAAG
ATGAAGAGTCCGGGGAGGAGAGTGACAAAGGCAAGGAACGGAGCAAAGTC
GACACCTCTCCCGAAAAAGTCGAGGATGGTGAGGGTATCGAAGACAACAA
G
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