prot_C-tenellus_contig9212.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig9212.2.1
Unique Nameprot_C-tenellus_contig9212.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length304
Homology
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BLAST of mRNA_C-tenellus_contig9212.2.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-10
Identity = 50/114 (43.86%), Postives = 62/114 (54.39%), Query Frame = 0 
Query:   71 LALSVNCAAGSVTAEWFGSVVINSTIVVGAGTRLEITGG-DDLAAVDGNSSIRLFEVGEGGYLNLEGVTLKNGKA-----------------TNIPTKKFTGEGGAVFVSEGSL 166
            LAL+VNC+ GS   EW G+VV+N TI V  GT L ITG     AA+DGNS  RLF V     L++ G+ L +G +                 TN      +G GGAVFVS+GSL
Sbjct:  236 LALAVNCSGGSFEVEWVGTVVVNETIFVTDGTVLTITGAAGSNAALDGNSVTRLFTV-VNAALHVSGINLSHGASISGGAIAAGGSTLTFNQTNFIGNVASGNGGAVFVSDGSL 348
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BLAST of mRNA_C-tenellus_contig9212.2.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.250e-10
Identity = 52/144 (36.11%), Postives = 71/144 (49.31%), Query Frame = 0 
Query:   52 PCIPSAQFA-TVSSPMDADTLALSVNCAAGSVTAEWFGSVVINSTIVVGAGTRLEITGGDDLAAVDGNSSIRLFEVGEGGYLNLEGVTLKNGKATNIPTKKFTGEGGAVFVSEGSLNATGCLFEGNRADIDGGCISATNDSAVV 194
            PC    Q    V     A  LA +VNC+ GS   EW G+VV+ S   V  GT L ITG    AA+DGN++ RLF V     L+L GV + +G +T          GGA+  +  +L      F  N A  +GG I  ++ S++V
Sbjct:  143 PCSAEVQQTWVVDDSAQAQALASAVNCSGGSFEVEWRGTVVVESVFYVVDGTTLSITGDGSSAAIDGNAATRLFTV-VNATLHLTGVDVTSGASTT---------GGAIAAAGATLTLNQTNFLRNTATGNGGAIYLSDGSSMV 276
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BLAST of mRNA_C-tenellus_contig9212.2.1 vs. uniprot
Match: A0A538P8G6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A538P8G6_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.200e-7
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 0 
Query:   80 GSVTAEWFGSVVINSTIVVGAGTRLEITGGDDLAAVDGNSSIRLFEVGEGGYLNLEGVTLKNGKATNIP----TKKFTGEGGAVFVSEGSLNATGCLFEGNRA 178
            G+VT    G +V+ STI +   T L+ TG      + GN S+RLF VG      L  +TL +G     P    T   +G+GGA+FV  G L AT C F  NRA
Sbjct:   42 GNVTFGCSGVIVLTSTISITTDTVLDGTG--QSVTISGNDSVRLFNVGNNVSFTLINLTLAHGNHLGAPGDAQTPGGSGQGGALFVDGGVLQATQCQFRENRA 142
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9212.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSC0_ECTSI2.200e-1043.86Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5K0E9_9PHAE5.250e-1036.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A538P8G6_9BACT1.200e-739.81Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 86..291

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9212contigC-tenellus_contig9212:4407..5853 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9212.2.1mRNA_C-tenellus_contig9212.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig9212 4407..6016 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig9212.2.1 ID=prot_C-tenellus_contig9212.2.1|Name=mRNA_C-tenellus_contig9212.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=304bp
MSNQPYGFVEGKKERSRLLGTRQYECRQGLASQFLAAFTFLLHLGGAMSL
EPCIPSAQFATVSSPMDADTLALSVNCAAGSVTAEWFGSVVINSTIVVGA
GTRLEITGGDDLAAVDGNSSIRLFEVGEGGYLNLEGVTLKNGKATNIPTK
KFTGEGGAVFVSEGSLNATGCLFEGNRADIDGGCISATNDSAVVVEKSVF
LRCWAGIEPAVGDEDAVGDGGGIKVATGKCLITNSLFEDCYAGNKGGGAS
LVNGNFSVSNTTFILNNVGGGLTDEEEDPIGAGGGLVMSDCFEGYDGGNC
TVSS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence