mRNA_C-tenellus_contig9212.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-tenellus_contig9212.2.1
Unique Name	mRNA_C-tenellus_contig9212.2.1
Type	mRNA
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)

Homology

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BLAST of mRNA_C-tenellus_contig9212.2.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.490e-10
Identity = 50/114 (43.86%), Postives = 62/114 (54.39%), Query Frame = 2

Query:  374 LALSVNCAAGSVTAEWFGSVVINSTIVVGAGTRLEITGG-DDLAAVDGNSSIRLFEVGEGGYLNLEGVTLKNGKA-----------------TNIPTKKFTGEGGAVFVSEGSL 661
            LAL+VNC+ GS   EW G+VV+N TI V  GT L ITG     AA+DGNS  RLF V     L++ G+ L +G +                 TN      +G GGAVFVS+GSL
Sbjct:  236 LALAVNCSGGSFEVEWVGTVVVNETIFVTDGTVLTITGAAGSNAALDGNSVTRLFTV-VNAALHVSGINLSHGASISGGAIAAGGSTLTFNQTNFIGNVASGNGGAVFVSDGSL 348

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BLAST of mRNA_C-tenellus_contig9212.2.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.050e-9
Identity = 52/144 (36.11%), Postives = 71/144 (49.31%), Query Frame = 2

Query:  317 PCIPSAQFA-TVSSPMDADTLALSVNCAAGSVTAEWFGSVVINSTIVVGAGTRLEITGGDDLAAVDGNSSIRLFEVGEGGYLNLEGVTLKNGKATNIPTKKFTGEGGAVFVSEGSLNATGCLFEGNRADIDGGCISATNDSAVV 745
            PC    Q    V     A  LA +VNC+ GS   EW G+VV+ S   V  GT L ITG    AA+DGN++ RLF V     L+L GV + +G +T          GGA+  +  +L      F  N A  +GG I  ++ S++V
Sbjct:  143 PCSAEVQQTWVVDDSAQAQALASAVNCSGGSFEVEWRGTVVVESVFYVVDGTTLSITGDGSSAAIDGNAATRLFTV-VNATLHLTGVDVTSGASTT---------GGAIAAAGATLTLNQTNFLRNTATGNGGAIYLSDGSSMV 276

[Close]

BLAST of mRNA_C-tenellus_contig9212.2.1 vs. uniprot
Match: A0A538P8G6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A538P8G6_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.750e-7
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 2

Query:  401 GSVTAEWFGSVVINSTIVVGAGTRLEITGGDDLAAVDGNSSIRLFEVGEGGYLNLEGVTLKNGKATNIP----TKKFTGEGGAVFVSEGSLNATGCLFEGNRA 697
            G+VT    G +V+ STI +   T L+ TG      + GN S+RLF VG      L  +TL +G     P    T   +G+GGA+FV  G L AT C F  NRA
Sbjct:   42 GNVTFGCSGVIVLTSTISITTDTVLDGTG--QSVTISGNDSVRLFNVGNNVSFTLINLTLAHGNHLGAPGDAQTPGGSGQGGALFVDGGVLQATQCQFRENRA 142

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig9212.2.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig9212.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LSC0_ECTSI	4.490e-10	43.86	Polymorphic Outer membrane protein G/I family n=3 ...	[more]
A0A6H5K0E9_9PHAE	1.050e-9	36.11	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A538P8G6_9BACT	1.750e-7	39.81	Uncharacterized protein (Fragment) n=1 Tax=Verruco...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig9212	contig	C-tenellus_contig9212:4407..6016 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D7FHG7
PFAMs	NTP_transf_2,PAP_assoc
Model size	1076
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03514,ko:K11700
KEGG Pathway	ko03018,map03018
KEGG Module	M00393
Hectar predicted targeting category	other localisation
GOs	GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons	3
Evalue	1.05e-13
EggNOG OGs	COG5260@1\|root,KOG1906@2759\|Eukaryota
EC	2.7.7.19
Description	polynucleotide adenylyltransferase activity
Cds size	912
COG category	L
BRITE	ko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790156.7614858-CDS-C-tenellus_contig9212:4406..4489	1680790156.7614858-CDS-C-tenellus_contig9212:4406..4489	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig9212 4407..4489 -
1680790156.7758756-CDS-C-tenellus_contig9212:4714..4871	1680790156.7758756-CDS-C-tenellus_contig9212:4714..4871	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig9212 4715..4871 -
1680790156.7865422-CDS-C-tenellus_contig9212:5181..5853	1680790156.7865422-CDS-C-tenellus_contig9212:5181..5853	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig9212 5182..5853 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790156.798238-UTR-C-tenellus_contig9212:5853..6016	1680790156.798238-UTR-C-tenellus_contig9212:5853..6016	Choristocarpus tenellus KU2346	UTR	C-tenellus_contig9212 5854..6016 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig9212.2.1	prot_C-tenellus_contig9212.2.1	Choristocarpus tenellus KU2346	polypeptide	C-tenellus_contig9212 4407..5853 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-tenellus_contig9212:4407..6016-
coding sequence from alignment at C-tenellus_contig9212:4407..6016-

protein sequence of mRNA_C-tenellus_contig9212.2.1

>prot_C-tenellus_contig9212.2.1 ID=prot_C-tenellus_contig9212.2.1|Name=mRNA_C-tenellus_contig9212.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=304bp
MSNQPYGFVEGKKERSRLLGTRQYECRQGLASQFLAAFTFLLHLGGAMSL
EPCIPSAQFATVSSPMDADTLALSVNCAAGSVTAEWFGSVVINSTIVVGA
GTRLEITGGDDLAAVDGNSSIRLFEVGEGGYLNLEGVTLKNGKATNIPTK
KFTGEGGAVFVSEGSLNATGCLFEGNRADIDGGCISATNDSAVVVEKSVF
LRCWAGIEPAVGDEDAVGDGGGIKVATGKCLITNSLFEDCYAGNKGGGAS
LVNGNFSVSNTTFILNNVGGGLTDEEEDPIGAGGGLVMSDCFEGYDGGNC
TVSS

mRNA from alignment at C-tenellus_contig9212:4407..6016-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-tenellus_contig9212.2.1 ID=mRNA_C-tenellus_contig9212.2.1|Name=mRNA_C-tenellus_contig9212.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1610bp|location=Sequence derived from alignment at C-tenellus_contig9212:4407..6016- (Choristocarpus tenellus KU2346)
CAGACACCAAGCAATCTCGCCAGGTTTATCACCTTTATGTTCTTTGATGA
TTTTGGGGATACTTTAACACCACGAACGTCGTTCTCCCTAAGACATCGCC
ATCTAGTTGTGTGAGCTGCTATTGAACATCAAGAGTCAACATATAACGAG
CACGAATTGGACGATGTCCAATCAGCCCTATGGCTTTGTTGAGGGGAAAA
AAGAGAGATCACGTCTGCTGGGCACTAGGCAATATGAATGCCGTCAAGGC
CTTGCTTCCCAATTCCTGGCCGCCTTCACTTTTCTACTTCATCTAGGAGG
TGCAATGTCGCTCGAACCATGTATCCCATCGGCACAATTCGCCACAGTCA
GCTCACCTATGGATGCCGATACCTTGGCCTTGAGCGTGAACTGTGCTGCA
GGATCGGTCACCGCCGAGTGGTTCGGGTCTGTGGTGATTAATTCCACTAT
TGTAGTGGGAGCAGGTACTCGCCTGGAAATCACCGGTGGAGACGACTTGG
CAGCAGTGGATGGCAATTCCTCCATTAGACTGTTCGAGGTGGGGGAAGGA
GGTTACCTCAACCTGGAGGGTGTTACGCTTAAGAACGGCAAAGCAACAAA
TATTCCGACAAAAAAATTCACGGGGGAGGGAGGTGCAGTTTTTGTGTCTG
AGGGGTCTTTGAATGCAACAGGTTGTCTATTTGAAGGTAATCGGGCAGAC
ATTGATGGGGGTTGTATCTCGGCAACCAACGATTCCGCCGTGGTCGTTGA
GAAAAGCGTGTTTCTAAGGTGTTGGGCGGGCATAGAACCTGCTGTGGGAG
ATGAGGACGCTGTTGGGGATGGTGGAGGTATCAAGGTGCGATGTTGTGTA
AAATTATTTCTGGTCGAACATCGTCTCAACTGTTCAACTACCTAGTCCCT
ACACACTTTGACATTTACTTGAATGCACATATCTATCGATTGTCCCCACC
ATTGCTGGGTGTTGCTTAAGAGGATTGTACTCTCTCTAGCTTCACTCCCT
GCTTGTTTTGCAGCTGCGAACTCTGCACCCTGAGAGCTAAGACTAACAGA
GTAGGTTCAACAACCGATAGCCTACGACCTCATTCCCCCCGCTTGTCATT
GAATCCATTTTTGCTACACAAACACATACACACCCTTGCACACAGGTGGC
AACGGGAAAGTGCCTGATTACGAACTCCTTGTTTGAGGATTGCTATGCTG
GAAACAAAGGTGGTGGGGCATCCCTTGTTAATGGAAACTTCTCCGTCTCA
AATACAACTTTTATTCTCAACAATGTGGGTGGAGGGTTGACTGACGAAGA
AGGTGATATTGGAACAGTAATTTTACCAATAGAGATATAATTGTGAAAAT
AAAATACACATAGACACTAGAGAAACGTGCACGGCGTACCTAAACGTCGT
CTCTCCTGGACGCACTCAAGTCCCAATCTTTCGTCCTCGTATGAAAAAAT
TATTCATGATACATGCATGGAAGAGATTATTTCCATTGAACCACCCCACC
CTCATTTCTGTTGCCCTGTTGCAAAAGAGGACCCCATTGGTGCTGGTGGT
GGCCTTGTGATGTCGGACTGCTTTGAAGGCTATGACGGAGGAAATTGTAC
AGTCTCCTCT

Coding sequence (CDS) from alignment at C-tenellus_contig9212:4407..6016-

>mRNA_C-tenellus_contig9212.2.1 ID=mRNA_C-tenellus_contig9212.2.1|Name=mRNA_C-tenellus_contig9212.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=912bp|location=Sequence derived from alignment at C-tenellus_contig9212:4407..6016- (Choristocarpus tenellus KU2346)
ATGTCCAATCAGCCCTATGGCTTTGTTGAGGGGAAAAAAGAGAGATCACG
TCTGCTGGGCACTAGGCAATATGAATGCCGTCAAGGCCTTGCTTCCCAAT
TCCTGGCCGCCTTCACTTTTCTACTTCATCTAGGAGGTGCAATGTCGCTC
GAACCATGTATCCCATCGGCACAATTCGCCACAGTCAGCTCACCTATGGA
TGCCGATACCTTGGCCTTGAGCGTGAACTGTGCTGCAGGATCGGTCACCG
CCGAGTGGTTCGGGTCTGTGGTGATTAATTCCACTATTGTAGTGGGAGCA
GGTACTCGCCTGGAAATCACCGGTGGAGACGACTTGGCAGCAGTGGATGG
CAATTCCTCCATTAGACTGTTCGAGGTGGGGGAAGGAGGTTACCTCAACC
TGGAGGGTGTTACGCTTAAGAACGGCAAAGCAACAAATATTCCGACAAAA
AAATTCACGGGGGAGGGAGGTGCAGTTTTTGTGTCTGAGGGGTCTTTGAA
TGCAACAGGTTGTCTATTTGAAGGTAATCGGGCAGACATTGATGGGGGTT
GTATCTCGGCAACCAACGATTCCGCCGTGGTCGTTGAGAAAAGCGTGTTT
CTAAGGTGTTGGGCGGGCATAGAACCTGCTGTGGGAGATGAGGACGCTGT
TGGGGATGGTGGAGGTATCAAGGTGGCAACGGGAAAGTGCCTGATTACGA
ACTCCTTGTTTGAGGATTGCTATGCTGGAAACAAAGGTGGTGGGGCATCC
CTTGTTAATGGAAACTTCTCCGTCTCAAATACAACTTTTATTCTCAACAA
TGTGGGTGGAGGGTTGACTGACGAAGAAGAGGACCCCATTGGTGCTGGTG
GTGGCCTTGTGATGTCGGACTGCTTTGAAGGCTATGACGGAGGAAATTGT
ACAGTCTCCTCT