prot_C-tenellus_contig7972.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7972.1.1
Unique Nameprot_C-tenellus_contig7972.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length175
Homology
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BLAST of mRNA_C-tenellus_contig7972.1.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.120e-34
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 0 
Query:   82 LNVVCNDVVKTILRGQDDDVK----ALHGRLLGHRDEIVL--DEMSGIFFENLLLVCKHELHPDVDKLKGRYSKAWTTILHYIEDAGWQLTDPPFRVMG 174
            LN+ CNDVV+TIL G   + K    AL  RL+  +D++V   D+MS +FF+NLLLVC+HELHPD+  L+G+Y KAW TILHY+EDAGWQLTDPPF + G
Sbjct:  101 LNIACNDVVRTILDGNPTNEKERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199
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BLAST of mRNA_C-tenellus_contig7972.1.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.100e-29
Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = 0 
Query:   79 QRLLNVVCNDVVKTILRGQ----DDDVKALHGRLLGHRDEIVL--DEMSGIFFENLLLVCKHELHPDVDKLKGRYSKAWTTILHYIEDAGWQLTDPPFRVMG 174
            Q+ LN+ CNDV+KTIL+      D D++ +  RL+  ++ +V+  D  S +F+ NL+ VC+H LHP + +LKGRY+ AW ++LH+IEDAGWQLT+PPFRV G
Sbjct:   55 QKHLNIACNDVIKTILKADAEKLDSDMQGIKERLIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7972.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T6_ECTSI1.120e-3459.60Plastid protein-export protein secB, putative n=2 ... [more]
A0A836CL25_9STRA7.100e-2950.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..174
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7972contigC-tenellus_contig7972:381..1047 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7972.1.1mRNA_C-tenellus_contig7972.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7972 235..3410 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7972.1.1 ID=prot_C-tenellus_contig7972.1.1|Name=mRNA_C-tenellus_contig7972.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=175bp
MRWWWVSILSTAAPGLSFTVPITHSRSWPLLPVGTLQINDQGVHRWHESL
STTQAKLWRPLPMQLNAQDQQVGDPDSQQRLLNVVCNDVVKTILRGQDDD
VKALHGRLLGHRDEIVLDEMSGIFFENLLLVCKHELHPDVDKLKGRYSKA
WTTILHYIEDAGWQLTDPPFRVMG*
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