prot_C-tenellus_contig7871.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7871.1.1
Unique Nameprot_C-tenellus_contig7871.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length125
Homology
BLAST of mRNA_C-tenellus_contig7871.1.1 vs. uniprot
Match: A0A6H5JNU1_9PHAE (LRAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU1_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.030e-20
Identity = 54/119 (45.38%), Postives = 72/119 (60.50%), Query Frame = 0
Query:    1 MVRTRALKAFEGSEEDGSWGGYNLLTNNCETFAYWCSTGRREAVSRQALRGIVGVG----GAITVAAAAGGVATGYATGLAVSKNAKRVVTTLELIGTTSALAMWATKATDTVSNMVTK 115
            ++ TRA +A +  E    W GYNL TNNCETFAYWCSTGRR+ +SRQA RG+VG G    GA  V +A G  + G A  + V +  + V   ++ I   + LA+ A  A D VS +VT+
Sbjct:  207 LIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQATRGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRGLRGVQRGVKAIEWATGLAVVAVAAADVVSTLVTR 325          
BLAST of mRNA_C-tenellus_contig7871.1.1 vs. uniprot
Match: D8LNF0_ECTSI (LRAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF0_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 8.440e-20
Identity = 53/119 (44.54%), Postives = 72/119 (60.50%), Query Frame = 0
Query:    1 MVRTRALKAFEGSEEDGSWGGYNLLTNNCETFAYWCSTGRREAVSRQALRGIVGVG----GAITVAAAAGGVATGYATGLAVSKNAKRVVTTLELIGTTSALAMWATKATDTVSNMVTK 115
            ++ TRA +A +  E    W GYNL TNNCETFAYWCSTGRR+ +SRQA RG+VG G    GA  V +A G  + G A  + V +  + V   ++ I   + +A+ A  A D VS +VT+
Sbjct:  191 LIVTRATEAAKFGEGASGWSGYNLCTNNCETFAYWCSTGRRQVLSRQAARGLVGAGVVAAGASAVVSAGGFASAGAAATVLVPRGVRGVQRGVKAIEWATGVAVVAVAAADVVSTLVTR 309          
BLAST of mRNA_C-tenellus_contig7871.1.1 vs. uniprot
Match: A0A6P5TMJ6_PRUAV (HRAS-like suppressor 2 n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5TMJ6_PRUAV)

HSP 1 Score: 50.8 bits (120), Expect = 4.040e-5
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 0
Query:    6 ALKAFEGSEEDGS-WGGYNLLTNNCETFAYWCSTGRREAVSRQALRGIVGVG 56
            A + F+  E DG+ +G Y+LL+NNCETFA +C TG+R  +SRQ ++ I  VG
Sbjct:  124 ATEIFKKDEVDGTGFGEYDLLSNNCETFASYCKTGKR--LSRQVIQAIASVG 173          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7871.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JNU1_9PHAE4.030e-2045.38LRAT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LNF0_ECTSI8.440e-2044.54LRAT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6P5TMJ6_PRUAV4.040e-550.00HRAS-like suppressor 2 n=1 Tax=Prunus avium TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007053LRAT domainPFAMPF04970LRATcoord: 17..40
e-value: 3.7E-6
score: 27.3
NoneNo IPR availableGENE3D3.90.1720.10endopeptidase domain like (from Nostoc punctiforme)coord: 2..50
e-value: 2.0E-8
score: 36.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7871contigC-tenellus_contig7871:4666..5785 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7871.1.1mRNA_C-tenellus_contig7871.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7871 3738..6477 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7871.1.1 ID=prot_C-tenellus_contig7871.1.1|Name=mRNA_C-tenellus_contig7871.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=125bp
MVRTRALKAFEGSEEDGSWGGYNLLTNNCETFAYWCSTGRREAVSRQALR
GIVGVGGAITVAAAAGGVATGYATGLAVSKNAKRVVTTLELIGTTSALAM
WATKATDTVSNMVTKKKRCRAVVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007053LRAT_dom