prot_C-tenellus_contig7868.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7868.1.1
Unique Nameprot_C-tenellus_contig7868.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length52
Homology
BLAST of mRNA_C-tenellus_contig7868.1.1 vs. uniprot
Match: A0A6H5KN68_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN68_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 4.360e-6
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 0
Query:    1 IDVRHHFLRDLARKGKIRVIFVGTVNQRTDVLTKNLPVRVFREHVKFVRNM 51
            IDVRHHFL +LA + +I VI V +  QR D LTK+L    F  H  FV N+
Sbjct:  592 IDVRHHFLWELAERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 642          
BLAST of mRNA_C-tenellus_contig7868.1.1 vs. uniprot
Match: A0A438HLL6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HLL6_VITVI)

HSP 1 Score: 49.3 bits (116), Expect = 2.100e-5
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:    1 IDVRHHFLRDLARKGKIRVIFVGTVNQRTDVLTKNLPVRVFREHVKFVRN 50
            IDVR HFLR+LA++G I ++  G+ +Q  D++TK L + VF++  K + N
Sbjct:  621 IDVRFHFLRNLAKEGTIELVHCGSQDQVADIMTKPLKLEVFQKFRKLLGN 670          
BLAST of mRNA_C-tenellus_contig7868.1.1 vs. uniprot
Match: A5BDF0_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BDF0_VITVI)

HSP 1 Score: 47.8 bits (112), Expect = 2.890e-5
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 0
Query:    1 IDVRHHFLRDLARKGKIRVIFVGTVNQRTDVLTKNLPVRVFREHVKFV 48
            IDVR HFLR+LA++G I ++  G+ +Q  D++TK L + VF++  K +
Sbjct:   91 IDVRFHFLRNLAKEGTIELVHCGSQDQVADIMTKPLKLEVFQKFRKLL 138          
BLAST of mRNA_C-tenellus_contig7868.1.1 vs. uniprot
Match: A0A438CJ15_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CJ15_VITVI)

HSP 1 Score: 47.8 bits (112), Expect = 5.730e-5
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 0
Query:    1 IDVRHHFLRDLARKGKIRVIFVGTVNQRTDVLTKNLPVRVFREHVKFV 48
            IDVR HFLR+LA++G I ++  G+ +Q  D++TK L + VF++  K +
Sbjct:  164 IDVRFHFLRNLAKEGTIELVHCGSQDQVADIMTKPLKLEVFQKFRKLL 211          
BLAST of mRNA_C-tenellus_contig7868.1.1 vs. uniprot
Match: A0A438K365_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K365_VITVI)

HSP 1 Score: 45.8 bits (107), Expect = 6.800e-5
Identity = 20/43 (46.51%), Postives = 31/43 (72.09%), Query Frame = 0
Query:    1 IDVRHHFLRDLARKGKIRVIFVGTVNQRTDVLTKNLPVRVFRE 43
            IDVR HFLR+LA+ G I ++  G+ +Q  D++TK L + VF++
Sbjct:   41 IDVRFHFLRNLAKDGTIELLHCGSQDQVVDIMTKPLKLEVFQK 83          
BLAST of mRNA_C-tenellus_contig7868.1.1 vs. uniprot
Match: A0A438ICZ7_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ICZ7_VITVI)

HSP 1 Score: 45.8 bits (107), Expect = 7.220e-5
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 IDVRHHFLRDLARKGKIRVIFVGTVNQRTDVLTKNLPVRVF 41
            +DVR HFLRDLA++  ++++  GT +Q  D+LTK L + VF
Sbjct:   44 MDVRFHFLRDLAKEEVVKLVHCGTNDQVVDILTKPLKLEVF 84          
BLAST of mRNA_C-tenellus_contig7868.1.1 vs. uniprot
Match: A0A6H5K0A8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A8_9PHAE)

HSP 1 Score: 47.0 bits (110), Expect = 9.490e-5
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 0
Query:    1 IDVRHHFLRDLARKGKIRVIFVGTVNQRTDVLTKNLPVRVF 41
            IDVRHHFLR+LA +G + +  V +  Q  D+LTK LP  +F
Sbjct:  151 IDVRHHFLRNLAEEGVLEIRHVSSEGQHADILTKALPRDLF 191          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7868.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KN68_9PHAE4.360e-650.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A438HLL6_VITVI2.100e-544.00Retrovirus-related Pol polyprotein from transposon... [more]
A5BDF0_VITVI2.890e-543.75Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A438CJ15_VITVI5.730e-543.75Retrovirus-related Pol polyprotein from transposon... [more]
A0A438K365_VITVI6.800e-546.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A438ICZ7_VITVI7.220e-548.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5K0A8_9PHAE9.490e-551.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7868contigC-tenellus_contig7868:1724..1879 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7868.1.1mRNA_C-tenellus_contig7868.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7868 1724..1879 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7868.1.1 ID=prot_C-tenellus_contig7868.1.1|Name=mRNA_C-tenellus_contig7868.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=52bp
IDVRHHFLRDLARKGKIRVIFVGTVNQRTDVLTKNLPVRVFREHVKFVRN
M*
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