prot_C-tenellus_contig7838.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7838.1.1
Unique Nameprot_C-tenellus_contig7838.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length129
Homology
BLAST of mRNA_C-tenellus_contig7838.1.1 vs. uniprot
Match: D7G280_ECTSI (TAFII55_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G280_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 3.520e-40
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 0
Query:    1 MDGETYPARLVDLPCILETQKTLDRNTYFKSGDVGQMLIVYEDERAFTKDEPNCS-MGPWGYYSDGITPPTKNIVRRRFLKARHP-STHDRAEVSKVETQVIRMME 104
            MDG+ YPARLVD+PC+LETQKTLD+ T+FKSGDVGQMLIVY+DE A+ KD+ N S +GP   Y DG+TPPTKNIVRRRF+KAR      DRAEV +VE+QV++M +
Sbjct:   49 MDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQ 154          
BLAST of mRNA_C-tenellus_contig7838.1.1 vs. uniprot
Match: A0A835YLK6_9STRA (TAFII55 protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK6_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.550e-32
Identity = 61/106 (57.55%), Postives = 78/106 (73.58%), Query Frame = 0
Query:    1 MDGETYPARLVDLPCILETQKTLDRNTYFKSGDVGQMLIVYEDERAFTKDEPNCSMGPWGYYSDGITPPTKNIVRRRFLKARHP-STHDRAEVSKVETQVIRMMES 105
            +DGE YPARLV+LPC LET KT D   Y+KS D+GQMLIVYEDE AF  D  + S+GP  YY+DGITPPT+NIVRR+F+KAR       +A+V  VE+Q+  ++ +
Sbjct:   52 IDGERYPARLVNLPCNLETLKTTDNTMYYKSADIGQMLIVYEDEDAFNADAEDASIGPAQYYADGITPPTRNIVRRKFVKARPVLGKFPKAQVMTVESQLEMLINA 157          
BLAST of mRNA_C-tenellus_contig7838.1.1 vs. uniprot
Match: B8C9G8_THAPS (TAFII55_N domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9G8_THAPS)

HSP 1 Score: 98.2 bits (243), Expect = 9.510e-22
Identity = 59/122 (48.36%), Postives = 70/122 (57.38%), Query Frame = 0
Query:    2 DGETYPARLVDLPCILETQKTLDRNTYFKSGDVGQMLIVYEDERAFTKDEPNCSM---GPWGYYSDGITPPTKNIVRRRFLKARH-----PSTHDRAEVSKVETQVIRMMES-GGRVDKGAG 114
            DG TYPARLV+LPC +E  KT D  TY KS DVGQMLIVYEDE A  + E        G   YY  GITPP K +VRRRFL         P    R+EV++VE ++  ++    G   KG G
Sbjct:   88 DGATYPARLVNLPCPVEVHKTHDHATYHKSADVGQMLIVYEDEYAMEEAENEKGYKIEGFLSYYHSGITPPMKRVVRRRFLSRFEERDVKPVPPYRSEVTEVEKEIQNLITKLSGEKGKGKG 209          
BLAST of mRNA_C-tenellus_contig7838.1.1 vs. uniprot
Match: A0A7S4K4B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K4B9_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 5.870e-21
Identity = 51/115 (44.35%), Postives = 68/115 (59.13%), Query Frame = 0
Query:    2 DGETYPARLVDLPCILETQKTLDRNTYFKSGDVGQMLIVYEDERAFTKDEPNCSMGPWG---YYSDGITPPTKNIVRRRFLKARHPSTHD-RAEVSKVETQVIRMMESGGRVDKG 112
            DG +YPARLV+LPC +E  KT D  TY+K  DVGQ+LIVYEDE    + E        G   YY  G+TPP K +V+RRF    H +    R+EVS VE ++  +++   +  KG
Sbjct:   43 DGASYPARLVNLPCPVELHKTFDHATYYKCSDVGQILIVYEDETHLEEAESVPGYRTEGFPSYYHSGLTPPMKRVVQRRFDSREHDAVAPPRSEVSSVERELRELIDKTSKDTKG 157          
BLAST of mRNA_C-tenellus_contig7838.1.1 vs. uniprot
Match: K0SSF0_THAOC (TAFII55_N domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SSF0_THAOC)

HSP 1 Score: 95.9 bits (237), Expect = 8.640e-21
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 0
Query:    2 DGETYPARLVDLPCILETQKTLDRNTYFKSGDVGQMLIVYEDERAFTKDEPNCSMGPWG---YYSDGITPPTKNIVRRRFL-----KARHPSTHDRAEVSKVETQVIRMMESGGRVDKGA 113
            DG TYPARLV+LPC +E  KTLD   Y K+ DVGQMLIVYEDE +  + E +      G   Y+  G+TPP + +V+RRFL     +   P    R+EVS+VET++  ++    ++ KGA
Sbjct:   87 DGATYPARLVNLPCPVEVHKTLDHANYHKASDVGQMLIVYEDEYSMEEAENDKEYKVEGFPSYFHSGLTPPMRRVVQRRFLSRFEERDTKPVPPPRSEVSQVETELQELIA---KLSKGA 203          
BLAST of mRNA_C-tenellus_contig7838.1.1 vs. uniprot
Match: A0A7R9ZSK7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSK7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.210e-20
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 0
Query:    2 DGETYPARLVDLPCILETQKTLDRNTYFKSGDVGQMLIVYEDERAFTKDE--PNCSMGPWGYYSDGITPPTKNIVRRRFLKARHPSTHD-RAEVSKVETQVIRMMESGGRVDKGAG 114
            DG TYPARLV+LPC +E  KT D   Y+K+ DV QMLIV+ED  A  + +  P     P  YY  G+TPP + +V R+F +  H +    RAEVS VE++++ +M+   ++ K AG
Sbjct:   16 DGATYPARLVNLPCPIELHKTHDHVMYYKTSDVAQMLIVFEDSMALDESDAIPKVDGYP-SYYHSGLTPPMRRVVERKFSQREHRAIPPPRAEVSDVESEMLELMQ---KISKEAG 127          
BLAST of mRNA_C-tenellus_contig7838.1.1 vs. uniprot
Match: A0A6T7FFZ8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7FFZ8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.950e-20
Identity = 50/107 (46.73%), Postives = 61/107 (57.01%), Query Frame = 0
Query:    2 DGETYPARLVDLPCILETQKTLDRNTYFKSGDVGQMLIVYEDERAFTKDEPNCSMGPWG---YYSDGITPPTKNIVRRRFLKARHPSTHD-RAEVSKVETQVIRMME 104
            DG  YP RLV+LPC +E  KT D   Y+K  DVGQ LIVYEDE A  + E        G   YY  G+TPP K +V RRF    H S    R+EV  VE ++I ++E
Sbjct:   92 DGAHYPGRLVNLPCPVEVHKTHDHTMYYKCADVGQALIVYEDENAMDEAESAAGYNQEGFPSYYHSGLTPPMKRVVERRFEAREHKSVAPPRSEVMDVENELIELIE 198          
BLAST of mRNA_C-tenellus_contig7838.1.1 vs. uniprot
Match: A0A1E7F4Q9_9STRA (TAFII55_N domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4Q9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.940e-20
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = 0
Query:    2 DGETYPARLVDLPCILETQKTLDRNTYFKSGDVGQMLIVYEDERAFTKDE--PNCSMGPWGYYSDGITPPTKNIVRRRFLKARH-PSTHDRAEVSKVETQVIRMM 103
            DG TYPARLV+LPC +E  KT D   Y+KS D+ QMLI+YED  A  + +  P     P  YY  GITPP K +V RRF    H P    R EVS VE ++  +M
Sbjct:   92 DGATYPARLVNLPCPIEVHKTHDHAMYYKSCDIAQMLIIYEDSMALDEADAYPKTDGYP-SYYHSGITPPLKRVVERRFAFREHQPRAPPRDEVSDVEKELHELM 195          
BLAST of mRNA_C-tenellus_contig7838.1.1 vs. uniprot
Match: A0A7S2KEH4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KEH4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.220e-19
Identity = 55/126 (43.65%), Postives = 69/126 (54.76%), Query Frame = 0
Query:    2 DGETYPARLVDLPCILETQKTLDRNTYFKSGDVGQMLIVYEDERAFTKDEPNCSMGPWG---YYSDGITPPTKNIVRRRFL--------KARHPSTHDRAEVSKVETQVIRMMESGGRVDKGAGAG 116
            DG TYPARLV+LPC +E  KT D  TY KS D+GQMLIVYEDE A  + E        G   YY  G++PP K +V+RRF         KA  P   + +EV K   ++I  + +     KG G G
Sbjct:   95 DGATYPARLVNLPCPVEVHKTHDHATYHKSADIGQMLIVYEDEYAMEEAENEKGYKIEGFPSYYHSGLSPPMKRVVQRRFRARFEERESKAIPPPHKEVSEVEKGIQELITKLSAKPGKQKGRGRG 220          
BLAST of mRNA_C-tenellus_contig7838.1.1 vs. uniprot
Match: A0A7S0TBH4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0TBH4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 7.770e-19
Identity = 51/105 (48.57%), Postives = 65/105 (61.90%), Query Frame = 0
Query:    2 DGETYPARLVDLPCILETQKTLDRNTYFKSGDVGQMLIVYEDERAFTK-DEPNCSMGPWGYYSDGITPPTKNIVRRRFLKARH-PST-HDRAEVSKVETQVIRMM 103
            DG TYPARLV+LPC +E  KT D   Y+KS D+ QMLIVYED  A  + D    + G   YY  GITP  KN+V++R+    H P T + R EVS VE ++  +M
Sbjct:   80 DGATYPARLVNLPCPVEVHKTHDHAMYYKSCDIAQMLIVYEDSMALDEADAHPKTEGYPSYYHSGITPSMKNVVQKRYSFREHQPGTKYPRNEVSDVERELHELM 184          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7838.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G280_ECTSI3.520e-4066.98TAFII55_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YLK6_9STRA2.550e-3257.55TAFII55 protein conserved region-domain-containing... [more]
B8C9G8_THAPS9.510e-2248.36TAFII55_N domain-containing protein n=1 Tax=Thalas... [more]
A0A7S4K4B9_9STRA5.870e-2144.35Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
K0SSF0_THAOC8.640e-2145.00TAFII55_N domain-containing protein n=1 Tax=Thalas... [more]
A0A7R9ZSK7_9STRA1.210e-2043.97Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A6T7FFZ8_9STRA2.950e-2046.73Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1E7F4Q9_9STRA5.940e-2048.57TAFII55_N domain-containing protein n=1 Tax=Fragil... [more]
A0A7S2KEH4_9STRA5.220e-1943.65Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S0TBH4_9STRA7.770e-1948.57Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006751TAFII55 protein, conserved regionSMARTSM01370TAFII55_N_2coord: 1..110
e-value: 3.5E-8
score: 25.7
IPR006751TAFII55 protein, conserved regionPFAMPF04658TAFII55_Ncoord: 2..105
e-value: 8.6E-23
score: 80.9
IPR006751TAFII55 protein, conserved regionCDDcd08047TAF7coord: 2..106
e-value: 3.70577E-33
score: 111.977
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..129
IPR037817Transcription initiation factor TFIID subunit 7PANTHERPTHR12228TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATEDcoord: 2..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7838contigC-tenellus_contig7838:14..1512 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7838.1.1mRNA_C-tenellus_contig7838.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7838 14..1525 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7838.1.1 ID=prot_C-tenellus_contig7838.1.1|Name=mRNA_C-tenellus_contig7838.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=129bp
MDGETYPARLVDLPCILETQKTLDRNTYFKSGDVGQMLIVYEDERAFTKD
EPNCSMGPWGYYSDGITPPTKNIVRRRFLKARHPSTHDRAEVSKVETQVI
RMMESGGRVDKGAGAGGAEEGGGGGGGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006751TAFII55_prot_cons_reg
IPR037817TAF7