prot_C-tenellus_contig778.6.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig778.6.1
Unique Name	prot_C-tenellus_contig778.6.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	157

Homology

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BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 3.550e-94
Identity = 136/156 (87.18%), Postives = 149/156 (95.51%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVAN-GESGFGSKS 155
            MIKFVLMVNKMGQTR+SSYY+WM IPERVALEAEVVRRCF+RSELQCSFFEFRGYKI+YRRYASLFFIVGVGV+SDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHF+LDEMVLNGYICEGN++NVLK + L+D  ++ G+S FGSKS
Sbjct:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKS 156

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BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.340e-91
Identity = 133/157 (84.71%), Postives = 148/157 (94.27%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKV-ANGESGFGSKSL 156
            MIKFVLMVNKMGQTR+SSYYEW+ IPERVALEAEVVRRCF+RSELQCSFFEFRGYKI+YRRYASLFFIVGV   SD+ENELG+LEFIHCLVETLDKYFQSVCELDIMFNLEKTHF+LDEMV+NG +CE N+DN+LK +QL+DKV AN ++GFGSKSL
Sbjct:    1 MIKFVLMVNKMGQTRVSSYYEWLPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVD-SSDEENELGMLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVMNGCVCEANRDNILKPLQLMDKVSANDDAGFGSKSL 156

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BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.010e-76
Identity = 109/154 (70.78%), Postives = 135/154 (87.66%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESGFGSK 154
            MIKF+LMVNK GQTR+SSY+EWM+IPERVALE+E++R+C +R+E QCSF E+RGY+++YRRYASLFFIVGVG  +D+ENELGVLEFIH LVETLDKYF+SVCELDIMFN+EK HF+LDEMV+NGYI E N+ N+LK +  +DK+AN E    S+
Sbjct:    1 MIKFILMVNKQGQTRLSSYFEWMTIPERVALESEIIRKCLSRAEYQCSFLEYRGYRVIYRRYASLFFIVGVG--ADEENELGVLEFIHSLVETLDKYFESVCELDIMFNMEKAHFILDEMVMNGYIMETNRTNILKPIAQMDKMANSEDSIFSR 152

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BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A2R5GZ26_9STRA (AP complex subunit sigma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZ26_9STRA)

HSP 1 Score: 219 bits (558), Expect = 4.740e-71
Identity = 105/145 (72.41%), Postives = 126/145 (86.90%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVA 145
            MIKFVLMVNK GQTR+SSYYEW++I ER ALEAE++R+C AR+E QCSF E RGYK+VYRRYASLFFIVGV  + D+ENELG+LEFIHCLVETLDKYF +VCELDIMFNLEK HF+L+EMV NG++ E N+ NVLK + +LD ++
Sbjct:    1 MIKFVLMVNKQGQTRLSSYYEWLTIEERGALEAEIIRKCLARTENQCSFMENRGYKVVYRRYASLFFIVGV--DQDEENELGILEFIHCLVETLDKYFSNVCELDIMFNLEKAHFILNEMVQNGHVVEANKANVLKPITMLDSIS 143

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BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA)

HSP 1 Score: 219 bits (557), Expect = 8.490e-71
Identity = 104/144 (72.22%), Postives = 126/144 (87.50%), Query Frame = 0

Query:    2 IKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVA 145
            IKFVLMVNK GQTR+S+YYEW+S+PERVALEAE++R C +RSE QCSF E+RGYK+VYRRYASLFFIVGV  + D ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HF+LDEMV++G + E N+ N+LK + L++K +
Sbjct:    3 IKFVLMVNKQGQTRLSTYYEWLSMPERVALEAEIIRTCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGV--DQDGENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVVDGCVVETNKVNILKPIALMEKAS 144

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BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN)

HSP 1 Score: 218 bits (556), Expect = 1.250e-70
Identity = 103/144 (71.53%), Postives = 125/144 (86.81%), Query Frame = 0

Query:    2 IKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVA 145
            I+F+LMVNK GQTR+S+YYEW+ +PERVALE+E++R+C +RSE QCSF E+RGYK+VYRRYASLFFIVG   E D ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HF+LDEMV+NG I E N+ NVLK + L++K +
Sbjct:    3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGC--EQDSENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKPIALMEKAS 144

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BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: W7U353_9STRA (AP complex subunit sigma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U353_9STRA)

HSP 1 Score: 216 bits (549), Expect = 2.460e-69
Identity = 105/168 (62.50%), Postives = 130/168 (77.38%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDD--------------ENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESGFGSK 154
            MI+F+L VNK GQTR+SSYY WMSIPERVALEAE++R+C +RSELQC F E+RG+K++YRRYASLFFIVGV  E DD              ENEL +LEFIH LVETLDKYF+SVCELDIMFNLEK HF++DEMV+NG+I + N+ N+LK + L++K +  E    S+
Sbjct:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGV--EGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSR 166

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BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A7S3GXI4_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI4_9STRA)

HSP 1 Score: 214 bits (544), Expect = 8.370e-69
Identity = 99/154 (64.29%), Postives = 130/154 (84.42%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESGFGSK 154
            MIKFVLMVNK GQTR++SY++W  I ERVALEAE++RRC +R+E QCSF E+RG+K+VYRRYASLFF+V V  + ++ENEL +LEFIH LVET+DKYF+SVCELDIMF++EK H+++DEMV+NG I E N+ N+LK + L+DK+A+ E G  S+
Sbjct:    1 MIKFVLMVNKQGQTRLASYFQWYPIQERVALEAEIIRRCLSRTEFQCSFIEYRGFKVVYRRYASLFFVVAV--DGEEENELAILEFIHSLVETMDKYFESVCELDIMFHIEKAHYIVDEMVVNGSIVENNKVNILKPLALMDKLASAEGGIFSR 152

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BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA)

HSP 1 Score: 212 bits (540), Expect = 6.560e-68
Identity = 105/154 (68.18%), Postives = 129/154 (83.77%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESGFGSK 154
            M+KFVLMVNK GQTR+SSYYEW+ + ER ALEAE++R+C +R+E QCSF E+RGYK++YRRYASLFFIVG+    D+ NELGVLEFIH LVETLDKYF+SVCELDIMFNLEK HF+L+EMV NG I E N+ N+LK + L++K A+ +S F SK
Sbjct:   20 MLKFVLMVNKQGQTRLSSYYEWIPMQERCALEAEIIRKCLSRNETQCSFVEYRGYKVIYRRYASLFFIVGM---KDNMNELGVLEFIHALVETLDKYFESVCELDIMFNLEKAHFILEEMVQNGCIFETNKANILKPIMLMEK-ASDDSVFSSK 169

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BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Match: F0W0A7_9STRA (AP complex subunit sigma n=21 Tax=Oomycota TaxID=4762 RepID=F0W0A7_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.140e-67
Identity = 100/143 (69.93%), Postives = 124/143 (86.71%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFFEFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDK 143
            MIKFVLMVNK GQTR++ YY+++SI ERVALEAE++R+C +R+E QCSF E+RGYK++YRRYASLFFIVGV    D ENELG+LEFIH LVET+DKYF+SVCELDIMFNLEK HF+LDEMV+NG I E N+ ++LK + L++K
Sbjct:    1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLSRNENQCSFVEYRGYKVIYRRYASLFFIVGVQ-NDDSENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGSIVESNKVSILKPIHLMEK 142

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig778.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LPP6_ECTSI	3.550e-94	87.18	AP complex subunit sigma n=1 Tax=Ectocarpus silicu...	[more]
A0A835Z9B6_9STRA	1.340e-91	84.71	AP complex subunit sigma n=1 Tax=Tribonema minus T...	[more]
A0A7S2UUI5_9STRA	1.010e-76	70.78	AP complex subunit sigma n=1 Tax=Fibrocapsa japoni...	[more]
A0A2R5GZ26_9STRA	4.740e-71	72.41	AP complex subunit sigma n=1 Tax=Hondaea fermental...	[more]
A0A7S3ZZG7_9STRA	8.490e-71	72.22	AP complex subunit sigma n=1 Tax=Pelagomonas calce...	[more]
F0Y567_AURAN	1.250e-70	71.53	AP complex subunit sigma n=1 Tax=Aureococcus anoph...	[more]
W7U353_9STRA	2.460e-69	62.50	AP complex subunit sigma n=2 Tax=Nannochloropsis g...	[more]
A0A7S3GXI4_9STRA	8.370e-69	64.29	AP complex subunit sigma n=1 Tax=Spumella elongata...	[more]
A0A7S2FA09_9STRA	6.560e-68	68.18	AP complex subunit sigma n=1 Tax=Florenciella parv...	[more]
F0W0A7_9STRA	2.140e-67	69.93	AP complex subunit sigma n=21 Tax=Oomycota TaxID=4...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..144 e-value: 1.3E-41 score: 141.9
None	No IPR available	GENE3D	3.30.450.60		coord: 1..152 e-value: 4.3E-58 score: 197.6
None	No IPR available	PANTHER	PTHR11753:SF50	AP COMPLEX SUBUNIT SIGMA	coord: 2..144
None	No IPR available	CDD	cd14832	AP4_sigma	coord: 3..143 e-value: 7.63762E-85 score: 243.294
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 1..154 e-value: 6.5E-51 score: 170.1
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 2..144
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..140

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig778	contig	C-tenellus_contig778:13899..14767 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig778.6.1	mRNA_C-tenellus_contig778.6.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig778 13899..14767 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig778.6.1 ID=prot_C-tenellus_contig778.6.1|Name=mRNA_C-tenellus_contig778.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=157bp
MIKFVLMVNKMGQTRISSYYEWMSIPERVALEAEVVRRCFARSELQCSFF
EFRGYKIVYRRYASLFFIVGVGVESDDENELGVLEFIHCLVETLDKYFQS
VCELDIMFNLEKTHFMLDEMVLNGYICEGNQDNVLKHMQLLDKVANGESG
FGSKSL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022775	AP_mu_sigma_su
IPR016635	AP_complex_ssu
IPR011012	Longin-like_dom_sf