prot_C-tenellus_contig7606.1.3 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7606.1.3
Unique Nameprot_C-tenellus_contig7606.1.3
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length540
Homology
BLAST of mRNA_C-tenellus_contig7606.1.3 vs. uniprot
Match: D8LHG8_ECTSI (BEACH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG8_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 2.960e-50
Identity = 191/537 (35.57%), Postives = 244/537 (45.44%), Query Frame = 0
Query:   16 VTGLEFFTSGGRAAVMAGGMLRVWDVERSATLATCLTEGHWNHEQDHLCWWGGGTSSGDPGLSFTAFTLTGCGEGVTPPLDISEWGVDCLGDEIGRQGAAVGRGWGDQQLLATTSSAEVMHFDLRQAHHTTSGAEGG--YPLPPAATWPLSGSLQNLQMPDFTRLVAFGMGEAHTPLDRVGAKRGTPLP-SLCCLCDGGEGDWVSVGSSEGQVVVLDKRVEGGRPLYRWNAHAGTVVRVFPVARNLLLTISRDLTAVVWDLSLAAPQIGWG------GP-----PAANVDANPARQWDARYTRSSRSWRDSEGELEDSLSSVTLPMEKSPMRAYTVSGLPDHGQGMSPATVYVHNMRYPLNSLEDVSMDSMSVYARDRRLEGGIGKVGSES-SSMGQGWVKSGSSGVFIKGRPYPFSSSTSIPLGPTSRPGPFMPVMFAFSGNRVAASAVSTCRREMFRGRGQWDIEQGAGQEFEVKNMKLTPKKIVDQSHGNMQAAPRARFSGGGGGGDTIGVGSVALLPLRQLLLLGCDDGCVKV 537
            VT L  F   GRAA + G ++RVWDVERS  LA C       H+  H          G P L  TAF+L+GCGEG TPPLD SEW      DE+    +       DQQL A+     V+HFD RQ      G  GG    L P A W +   LQ+L     ++  + G     +   R G     PLP  LC +C+G EG WV+ GS  G VVV DKR  GGRPL+ WNAH G VV VF VAR+LLLT+SRD TAV+WDLS  +P  G G      GP     P+  V A         Y+   +      G  E          E SP+R  T  GLPD   G+SPA V +  +  P                 +R    G+  V  ES S+ G+     G +G  I+                       +PV+FA SG+R+ AS V   RRE    R + ++          + +    K +  +  G          SG GG    + V S+A+LPLR+L LLGC DG V+V
Sbjct: 2339 VTQLGIFEGSGRAAALDG-LVRVWDVERSQGLAIC-------HQGAH---------KGAPPL--TAFSLSGCGEGTTPPLDDSEW------DEVSPGESGCFSAPDDQQLTASYGGG-VVHFDCRQ------GRSGGTVQDLFPVAQWDVDARLQSLLALPSSKGQSRGDHRHGSSSRRNGDA--APLPVGLCTVCEG-EGSWVAAGSGAGNVVVFDKRRPGGRPLFWWNAHGGVVVGVFHVARHLLLTMSRDRTAVLWDLS-RSPAEGSGFDSTGTGPALLRHPSWGVGA---------YSSGGQEGSGLAGGGEGGHG------EASPVRVSTAFGLPDAAPGLSPAAVLMLPLPPP------------PARPSNRLAGAGVSSVFGESFSASGRA---GGGAGARIRREK--------------------LPVLFAASGDRMVASVV---RREPDARRREEEVHP-------ARFLGPAGKTVKGKKGGVGXXXXXXSASGAGG----LVVRSIAVLPLRRLSLLGCADGWVRV 2775          
BLAST of mRNA_C-tenellus_contig7606.1.3 vs. uniprot
Match: A0A6H5KNG5_9PHAE (BEACH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG5_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 2.980e-50
Identity = 187/531 (35.22%), Postives = 244/531 (45.95%), Query Frame = 0
Query:   16 VTGLEFFTSGGRAAVMAGGMLRVWDVERSATLATCLTEGHWNHEQDHLCWWGGGTSSGDPGLSFTAFTLTGCGEGVTPPLDISEWGVDCLGDEIGRQGAAVGRGWGDQQLLATTSSAEVMHFDLRQAHHTTSGAEGG--YPLPPAATWPLSGSLQNLQMPDFTRLVAFGMGEAHTPLDRVGAKRGTPLP-SLCCLCDGGEGDWVSVGSSEGQVVVLDKRVEGGRPLYRWNAHAGTVVRVFPVARNLLLTISRDLTAVVWDLSLAAPQIGWGGPPAANVDANPAR----QWDARYTRSSRSWRDSEGELEDSLSSVTLPMEKSPMRAYTVSGLPDHGQGMSPATVYVHNMRYPLNSLEDVSMDSMSVYARDRRLEGGIGKVGSESSSMGQGWVKSGSSGVFIKGRPYPFSSSTSIPLGPTSRPGPFMPVMFAFSGNRVAASAVSTCRREMFRGRGQWDIEQGAGQEFEVKNMKLTPKKIVDQSHGNMQAAPRARFSGGGGGGDTIGVGSVALLPLRQLLLLGCDDGCVKVVT 539
            VT L  F   GRAA + G ++RVWDVERS  LA C       H+         GT  G P L  TAF+L+GCGEG TPPLD SEW      D++    +       DQQ+ A+     V+HFD RQ      G  GG    + P A W +   LQ+L     ++  + G     +   R G     PLP  LC +C+G EG WV+ GS  G VVV DKR  GGRPL+ WNAH G VV VF VAR+L+LT+SRD TAV+WDLS +  +    G    +    PA      W      S        G  E          E SP+R  T  GLPD   G+SPATV    +  PL+      ++ ++               G+  S  G+ +  SG +G   + R                R    +PV+FA SG+R+ AS V        RGR     E+G       + +    K +  +  G      R   SG GG    + V S+A+LPLR+L LLGC DG V+V T
Sbjct: 2443 VTQLGIFEVSGRAAALDG-LVRVWDVERSQGLAIC-------HQ---------GTHKGAPPL--TAFSLSGCGEGTTPPLDDSEW------DKVSPGESGCFSAPDDQQITASYGGG-VVHFDCRQ------GRSGGTAQDVFPVAQWDVDARLQSLLALPSSKGQSRGDHRHGSSSRRNGDA--APLPVGLCTVCEG-EGSWVAAGSGAGNVVVFDKRRPGGRPLFWWNAHGGVVVGVFHVARHLVLTMSRDRTAVLWDLSRSPGE----GSGIDSTGTGPALLRHPSWGVGAYSSGGQGSGLTGGGEGGYG------EASPVRVSTAFGLPDAAPGLSPATV----LMLPLSPPPTPPINRLA---------------GAGISLFGESFSASGRAGGGAEAR--------------LQREK--LPVLFAASGDRMVASVVRL--EPDARGR-----EEGL---HPARFLGPAGKTVKGKKGGVGSGGGRRSASGAGG----LVVRSIAVLPLRRLSLLGCADGWVRVGT 2879          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7606.1.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHG8_ECTSI2.960e-5035.57BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KNG5_9PHAE2.980e-5035.22BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 160..358
e-value: 4.8E-6
score: 28.3
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 13..537

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7606contigC-tenellus_contig7606:2488..6685 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7606.1.3mRNA_C-tenellus_contig7606.1.3Choristocarpus tenellus KU2346mRNAC-tenellus_contig7606 1878..6687 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7606.1.3 ID=prot_C-tenellus_contig7606.1.3|Name=mRNA_C-tenellus_contig7606.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=540bp
MGRFGHSEGTSWDRGVTGLEFFTSGGRAAVMAGGMLRVWDVERSATLATC
LTEGHWNHEQDHLCWWGGGTSSGDPGLSFTAFTLTGCGEGVTPPLDISEW
GVDCLGDEIGRQGAAVGRGWGDQQLLATTSSAEVMHFDLRQAHHTTSGAE
GGYPLPPAATWPLSGSLQNLQMPDFTRLVAFGMGEAHTPLDRVGAKRGTP
LPSLCCLCDGGEGDWVSVGSSEGQVVVLDKRVEGGRPLYRWNAHAGTVVR
VFPVARNLLLTISRDLTAVVWDLSLAAPQIGWGGPPAANVDANPARQWDA
RYTRSSRSWRDSEGELEDSLSSVTLPMEKSPMRAYTVSGLPDHGQGMSPA
TVYVHNMRYPLNSLEDVSMDSMSVYARDRRLEGGIGKVGSESSSMGQGWV
KSGSSGVFIKGRPYPFSSSTSIPLGPTSRPGPFMPVMFAFSGNRVAASAV
STCRREMFRGRGQWDIEQGAGQEFEVKNMKLTPKKIVDQSHGNMQAAPRA
RFSGGGGGGDTIGVGSVALLPLRQLLLLGCDDGCVKVVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf