prot_C-tenellus_contig7497.3.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7497.3.1
Unique Nameprot_C-tenellus_contig7497.3.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length237
Homology
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BLAST of mRNA_C-tenellus_contig7497.3.1 vs. uniprot
Match: D7FHF5_ECTSI (Nup54 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF5_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.560e-10
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:  163 SASEEALTRLQMAYLEKLP-NQQPNPACRMKHLLYNVVDPSLRHTYICPPYIDPKAWEK 220
            SAS++   +L  AY  K P N +PNP+CRMKH++YN VDPSLR++Y  PP++D K W+K
Sbjct:   61 SASQKEFEKLFEAYAAKNPANGEPNPSCRMKHVVYNQVDPSLRNSYTRPPHMDDKTWQK 119
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7497.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHF5_ECTSI1.560e-1054.24Nup54 domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..75
IPR024864Nucleoporin Nup54/Nup57/Nup44PANTHERPTHR13000NUCLEOPORIN P54coord: 1..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7497contigC-tenellus_contig7497:2418..4869 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7497.3.1mRNA_C-tenellus_contig7497.3.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7497 2083..4945 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7497.3.1 ID=prot_C-tenellus_contig7497.3.1|Name=mRNA_C-tenellus_contig7497.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=237bp
MSLFGTPAPAPAASGFNFGAPAPAPATPGAGGFSFGTNNPAPAPAPGAFG
STPAPTPSAFGGFGTPGAPAPATNSLFGAKPSGFGSFGTPAPAPAPSAGF
GAFGAFGAPAPAPAPAGSGGGGLFGLGFGQPSTGMTQQQQQQLQQPAFGA
AGGGVVSAVGSSSASEEALTRLQMAYLEKLPNQQPNPACRMKHLLYNVVD
PSLRHTYICPPYIDPKAWEKYSSAVLGLVQDAALVE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024864Nup54/Nup57/Nup44