prot_C-tenellus_contig7400.4.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7400.4.1
Unique Nameprot_C-tenellus_contig7400.4.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length120
Homology
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BLAST of mRNA_C-tenellus_contig7400.4.1 vs. uniprot
Match: D7FS57_ECTSI (Chloride channel protein EriC n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS57_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.140e-29
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 0 
Query:   10 IPQSINDEGRFLLLASLVGLITGTAVTVFKTMIGSVKRYSYGDLVGIFPVKFAPL-VAALVPVLGGAGVVLLKHLMALKSFGPGLSGLTEEVDRQTPWNPARWVFAT 115
            +P+   +E RFL++A+L+G+ITGTAVT+FKT+IG+VK++SY DL+G  P   A   + A +PVLG  GVV L   + LKS+GPGL GLTEEVDRQ PW P R +  T
Sbjct:  128 LPEDTAEESRFLIMAALLGVITGTAVTIFKTLIGAVKKFSYDDLIGRVPPGAASTCIGAFIPVLGAIGVVSLMWALQLKSYGPGLGGLTEEVDRQVPWRPRRTLGKT 234
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7400.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS57_ECTSI4.140e-2955.14Chloride channel protein EriC n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 81..119
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..60
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..80
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..41
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
IPR014743Chloride channel, coreSUPERFAMILY81340Clc chloride channelcoord: 11..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7400contigC-tenellus_contig7400:5302..6104 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7400.4.1mRNA_C-tenellus_contig7400.4.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7400 5302..6104 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7400.4.1 ID=prot_C-tenellus_contig7400.4.1|Name=mRNA_C-tenellus_contig7400.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp
MLWKLKNPSIPQSINDEGRFLLLASLVGLITGTAVTVFKTMIGSVKRYSY
GDLVGIFPVKFAPLVAALVPVLGGAGVVLLKHLMALKSFGPGLSGLTEEV
DRQTPWNPARWVFATHETM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014743Cl-channel_core