prot_C-tenellus_contig7327.3.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7327.3.1
Unique Nameprot_C-tenellus_contig7327.3.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length497
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7327.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 245..304
e-value: 1.3E-7
score: 31.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 364..397
e-value: 5.7E-4
score: 17.9
coord: 294..327
e-value: 0.0011
score: 17.0
coord: 261..293
e-value: 3.9E-4
score: 18.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 364..394
e-value: 0.022
score: 15.0
coord: 330..351
e-value: 0.25
score: 11.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 187..221
score: 5.185
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 327..361
score: 8.44
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 362..396
score: 8.561
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 222..256
score: 6.796
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 257..291
score: 9.964
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 437..467
score: 5.656
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 292..326
score: 10.315
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 282..490
e-value: 4.6E-31
score: 110.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 194..281
e-value: 5.2E-13
score: 51.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..96
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 342..487
coord: 197..360
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..497
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7327contigC-tenellus_contig7327:4102..5592 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7327.3.1mRNA_C-tenellus_contig7327.3.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7327 4023..5592 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7327.3.1 ID=prot_C-tenellus_contig7327.3.1|Name=mRNA_C-tenellus_contig7327.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=497bp
MGARRRRAPVGVLALATLTSRGHGSRFSAAFIARLTSTYWGSSRRRELRT
SAHKVTPEAPHRSMTTSIRLPVFMGDDSAGLGSEEDTDGSPSVAGIHGDN
NRIKDLGKGFSPRDAVEDKKDNGLLTARQEEHLRKLPRSAWDDLDAEEGF
SMIAAKLQEKGQIATGGGPLTPRRKLTREEWKEVRNYQCLCDDRVLGYAK
KGRWKDALVVLQEEKTAGRIISPRAFNTALRAVGTAGLVRPAIILINEIR
KVGLDVTVYNYGAALNACAKAGAASAALMLLDEMRLDGIQPNEIVYTSAI
KACGPGGHWREVLGLLERMEDEGTSPNGKHYNAAISVLGSVGRYREAMRL
LAQRDDRGIKRCTFTYVAAIDAAGKGGEANVALALLNEMLRDGLELNLMA
LNTTIFACAHAREPSQKIARAVADLLDMAFRGGVEVDHRTYSGAMMAMAQ
AGQVHKALGLLDVSSKPPNAHMYSSALTACRYARVEDLLPIAGVGKG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf