prot_C-tenellus_contig732.6.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig732.6.1
Unique Nameprot_C-tenellus_contig732.6.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length55
Homology
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BLAST of mRNA_C-tenellus_contig732.6.1 vs. uniprot
Match: A0A6H5L901_9PHAE (LsmAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L901_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.270e-5
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 0 
Query:    4 NACRLAVQIEGRDSVNRHCREERNRMTPQDLAMGEEERYSSV 45
            +A R+A +IEG+ S N H REERN +T QD AMGEEER+S V
Sbjct:  289 HAERMAAEIEGKTSSNIHMREERNMLTEQDKAMGEEERFSGV 330
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BLAST of mRNA_C-tenellus_contig732.6.1 vs. uniprot
Match: D7FVW6_ECTSI (LsmAD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW6_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 1.740e-5
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 0 
Query:    4 NACRLAVQIEGRDSVNRHCREERNRMTPQDLAMGEEERYSSV 45
            +A R+A +IEG+ S N H REERN +T QD AMGEEER+S V
Sbjct:  291 HAERMAAEIEGKTSGNIHMREERNMLTEQDKAMGEEERFSGV 332
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig732.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L901_9PHAE1.270e-561.90LsmAD domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FVW6_ECTSI1.740e-561.90LsmAD domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009604LsmAD domainPFAMPF06741LsmADcoord: 3..47
e-value: 6.1E-9
score: 36.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig732contigC-tenellus_contig732:12513..13463 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig732.6.1mRNA_C-tenellus_contig732.6.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig732 12511..13463 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig732.6.1 ID=prot_C-tenellus_contig732.6.1|Name=mRNA_C-tenellus_contig732.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=55bp
HYQNACRLAVQIEGRDSVNRHCREERNRMTPQDLAMGEEERYSSVPRAIS
MGDRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009604LsmAD_domain