prot_C-tenellus_contig7212.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7212.1.1
Unique Nameprot_C-tenellus_contig7212.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length435
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7212.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 253..286
e-value: 0.0016
score: 16.5
coord: 358..392
e-value: 1.7E-6
score: 25.8
coord: 323..357
e-value: 4.0E-8
score: 30.9
coord: 148..181
e-value: 0.002
score: 16.1
coord: 220..252
e-value: 7.0E-5
score: 20.7
coord: 183..216
e-value: 5.2E-4
score: 18.0
coord: 114..146
e-value: 1.0E-6
score: 26.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 111..157
e-value: 2.2E-10
score: 40.5
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 379..421
e-value: 0.0044
score: 17.1
coord: 273..334
e-value: 3.0E-12
score: 46.4
coord: 339..369
e-value: 7.8E-4
score: 19.5
coord: 204..262
e-value: 5.8E-9
score: 35.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 216..250
score: 10.49
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 356..390
score: 11.323
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 181..215
score: 10.304
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 391..425
score: 7.64
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 321..355
score: 11.849
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 251..285
score: 10.095
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 286..320
score: 8.276
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 146..180
score: 9.854
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..145
score: 11.049
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 74..194
e-value: 7.6E-25
score: 89.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 196..311
e-value: 2.0E-27
score: 98.4
coord: 312..432
e-value: 5.0E-31
score: 110.3
NoneNo IPR availablePANTHERPTHR47934PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIALcoord: 92..335
coord: 180..420

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7212contigC-tenellus_contig7212:2967..4271 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7212.1.1mRNA_C-tenellus_contig7212.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7212 2841..4734 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7212.1.1 ID=prot_C-tenellus_contig7212.1.1|Name=mRNA_C-tenellus_contig7212.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=435bp
MLQLLPAYVPTGDVVSGSLSIASKVHSHNMHMQRLRCLRLWGMSSLKCSG
ISSDVVEKKETGDTIIGKVRLDIAHQKHIFLKDILKKKETNDWAGAQKAL
AKAKANGMPVNLFMYNSCINVIAKSKRWKETLALMDEMRATGIEPDDFTY
GVAIKACIDSGEGERGLSLLDEMLAKRMTPSAYTYSSAIKACGDGGHWER
AQLLLKEMQVKGVKTDVYNYSTAIKACAEGAQWERALLLLKEMDVEGITP
NAYCYNAALLACEIVGKWESVLSLLDDMKAKGVAPDMYTCRLSVKVCMDK
GKWENTLLVLEKVKSMGVTPNKFTYSMIIKACGDGGQWERALLLLKEMQV
NGVDPDVVTYSTVLKACGDGGQWKLVLLLLDDMEAAGVRPNEITYTIAVV
SCKQAGQVEAAEMLEKKMKASRRKKAIFSANVGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf