prot_C-tenellus_contig7192.4.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7192.4.1
Unique Nameprot_C-tenellus_contig7192.4.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length76
Homology
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A6H5JJ47_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ47_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 7.550e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0
Query:   24 EIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDEVSDS 64
            E+DPL+EDISQEDAWVVIS+YFSEKGLVRQQLDSFDE   S
Sbjct:   96 ELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQS 136          
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 7.730e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0
Query:   24 EIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDEVSDS 64
            E+DPL+EDISQEDAWVVIS+YFSEKGLVRQQLDSFDE   S
Sbjct:   95 ELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQS 135          
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A2U1KVS3_ARTAN (DNA-directed RNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1KVS3_ARTAN)

HSP 1 Score: 60.8 bits (146), Expect = 2.900e-10
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 0
Query:    3 NGHDNVIDLDGMGENYDEYDNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 60
            N  DN +D +      DE +   +  +EDI+QEDAW VISSYF EKGLVRQQLDSFDE
Sbjct:    9 NNDDNEVDYNNNTMGGDEGEEYGEDEEEDITQEDAWAVISSYFEEKGLVRQQLDSFDE 66          
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A251V1W7_HELAN (DNA-directed RNA polymerase subunit beta n=7 Tax=Mesangiospermae TaxID=1437183 RepID=A0A251V1W7_HELAN)

HSP 1 Score: 63.9 bits (154), Expect = 3.980e-10
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 0
Query:   20 EYDNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 60
            EYD   D  +EDI+QEDAW VISSYF EKGLVRQQLDSFDE
Sbjct:    6 EYDQGYDDEEEDITQEDAWAVISSYFEEKGLVRQQLDSFDE 46          
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A7C8ZGU7_OPUST (DNA-directed RNA polymerase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZGU7_OPUST)

HSP 1 Score: 60.5 bits (145), Expect = 4.200e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 0
Query:   22 DNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 60
            D E D  +EDI+QEDAW VIS+YF EKGLVRQQLDSFDE
Sbjct:   22 DGEEDDEEEDITQEDAWAVISAYFEEKGLVRQQLDSFDE 60          
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.430e-10
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 0
Query:   24 EIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 60
            E+DP +E+I+QEDAW VISSYF+EKGLVRQQLDSFDE
Sbjct:    8 ELDPHEEEITQEDAWQVISSYFAEKGLVRQQLDSFDE 44          
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A1U7YXW1_NELNU (DNA-directed RNA polymerase subunit beta n=318 Tax=Magnoliopsida TaxID=3398 RepID=A0A1U7YXW1_NELNU)

HSP 1 Score: 63.2 bits (152), Expect = 7.420e-10
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 0
Query:   19 DEYDNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 60
            DEYD  ++  DE+I+QEDAW VIS+YF EKGLVRQQLDSFDE
Sbjct:    5 DEYDPSMNDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDE 46          
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: UPI001C689E82 (DNA-directed RNA polymerase II subunit RPB2-like n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI001C689E82)

HSP 1 Score: 59.7 bits (143), Expect = 9.010e-10
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0
Query:   20 EYDNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 60
            E+D   +  +EDI+QEDAW VISSYF EKGLVRQQLDSFDE
Sbjct:    6 EHDQGYNDDEEDITQEDAWTVISSYFEEKGLVRQQLDSFDE 46          
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A426YEA4_ENSVE (DNA-directed RNA polymerase n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426YEA4_ENSVE)

HSP 1 Score: 60.8 bits (146), Expect = 1.320e-9
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0
Query:   22 DNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE-VSDSKQGMM 69
            DN     DE+I+QEDAW VIS+YF EKGLVRQQLDSFDE +S + QG++
Sbjct:  107 DNHTTMEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFISTTMQGIV 155          
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A7J7LRZ0_9MAGN (DNA-directed RNA polymerase subunit beta n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7J7LRZ0_9MAGN)

HSP 1 Score: 61.6 bits (148), Expect = 2.590e-9
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0
Query:   20 EYDNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 60
            EYD  +D  +E+I+QEDAW VISS+F EKGLVRQQLDSFDE
Sbjct:    6 EYDPMVDDEEEEITQEDAWAVISSFFEEKGLVRQQLDSFDE 46          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ47_9PHAE7.550e-1385.37DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
D7FHZ3_ECTSI7.730e-1385.37DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A2U1KVS3_ARTAN2.900e-1058.62DNA-directed RNA polymerase n=1 Tax=Artemisia annu... [more]
A0A251V1W7_HELAN3.980e-1078.05DNA-directed RNA polymerase subunit beta n=7 Tax=M... [more]
A0A7C8ZGU7_OPUST4.200e-1076.92DNA-directed RNA polymerase n=1 Tax=Opuntia strept... [more]
A0A835YQ41_9STRA5.430e-1081.08DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A1U7YXW1_NELNU7.420e-1073.81DNA-directed RNA polymerase subunit beta n=318 Tax... [more]
UPI001C689E829.010e-1073.17DNA-directed RNA polymerase II subunit RPB2-like n... [more]
A0A426YEA4_ENSVE1.320e-965.31DNA-directed RNA polymerase n=1 Tax=Ensete ventric... [more]
A0A7J7LRZ0_9MAGN2.590e-973.17DNA-directed RNA polymerase subunit beta n=2 Tax=M... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7192contigC-tenellus_contig7192:6534..6761 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7192.4.1mRNA_C-tenellus_contig7192.4.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7192 6534..6761 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7192.4.1 ID=prot_C-tenellus_contig7192.4.1|Name=mRNA_C-tenellus_contig7192.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=76bp
MSNGHDNVIDLDGMGENYDEYDNEIDPLDEDISQEDAWVVISSYFSEKGL
VRQQLDSFDEVSDSKQGMMALRIRA*
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