prot_C-tenellus_contig71.3.8 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig71.3.8
Unique Name	prot_C-tenellus_contig71.3.8
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	521

Homology

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BLAST of mRNA_C-tenellus_contig71.3.8 vs. uniprot
Match: A0A7S2W5K6_9STRA (Choline transporter-like protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5K6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.650e-24
Identity = 99/401 (24.69%), Postives = 187/401 (46.63%), Query Frame = 0

Query:  118 WPLAVVLGVMAVNGVRWGTRLKDSRHFLGMLVDMVVEVLGEVRGAAGVPILILLLQVMYLIWWGRALSSSLTGTSMSSGWGGSVLVLMLFNLYWTCQVFRGIMVVFVSGTMSSCCTSDNRKSKGSGF-SQELVEGKGYLDEYDEYLNDDVLVGEGGRDGGDTDGNPLVSGRNESHDSVSGSGRPKERGSSRENTLVE-------NTLVAVYLRIALTSSFGSACKGAILSPLGQLRSMVTCLTSRVREPSGRQISRGGRCVDAFESLT---RGYHDLALVHVGAYSTAYSPAVDEVWKLLRQSGLEAVFAEDLVGPAMNWLSVSMAVLTAAAIGAAPHGHAADRLIFFTFLVFYVVRSCMQTGTEVLRSAVYAVYLQFVDNPHSLGERFSLIYHRLERVSE 507
            W L  +  V A    R   + +D   FL ++V++V+EVLG+     GV      + V +++WWG  + + +   S SS     ++ +ML +LYWT QV R  + + +SG +     + +  +K S   S E  E    L     Y +                  P       + ++   + +P++R  ++ + +         +++V  +LRIAL++SFGS C+GA+ +    +RS   C++   R P   +     RC    + L    R + +L  VHV A+S AY PA ++V  L+  + LE +  +D+    +   ++++A    A +       ++ + +    L F V  S      +++ SA++AV++ F ++P SL     +++HR +R++E
Sbjct:  116 WCLMGIAAVAAFQMFRGYLQSRDRAQFLDVMVELVLEVLGKYPLVFGVLAAGTAVHVGFIVWWGSVVVNVIQDPSSSSIESTIIVFVMLLSLYWTTQVLRLAIGLVISGVVYHWFANIDEDTKSSTEPSPEPEESVDLLPLRFAYAS------------------PSGDAVFRAVETQLETEQPRDRQPAKRSHVAPEWADGDPSSIVLHFLRIALSTSFGSLCRGALFAL--PIRSARMCVSVMSRGPRVTE-----RCAGPSQKLRQFLRDHTELLFVHVAAFSKAYRPAANDVGLLVASANLEVIEHDDVSRHVLRAAAIAIASSVFAVMSVVALAASSPQWMLIGGLDFLVACSSASLPLQIIDSAIFAVHMSFAEHPSSLRREHPIVHHRFQRIAE 491

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig71.3.8 vs. uniprot

BLAST of mRNA_C-tenellus_contig71.3.8 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A7S2W5K6_9STRA	1.650e-24	24.69	Choline transporter-like protein n=1 Tax=Rhizochro...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007603	Choline transporter-like	PFAM	PF04515	Choline_transpo	coord: 144..486 e-value: 3.9E-21 score: 75.7
IPR007603	Choline transporter-like	PANTHER	PTHR12385	CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)	coord: 320..504
IPR007603	Choline transporter-like	PANTHER	PTHR12385	CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)	coord: 12..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 294..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..308
None	No IPR available	PANTHER	PTHR12385:SF4	PROTEIN PNS1	coord: 12..232
None	No IPR available	PANTHER	PTHR12385:SF4	PROTEIN PNS1	coord: 320..504
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 137..156
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 113..117
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 118..136
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 157..179
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 15..33
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 64..83
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 180..190
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 84..94
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..14
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 212..520
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 34..63
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 95..112
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 191..211

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig71	contig	C-tenellus_contig71:7641..20346 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig71.3.8	mRNA_C-tenellus_contig71.3.8	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig71 5700..21984 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig71.3.8 ID=prot_C-tenellus_contig71.3.8|Name=mRNA_C-tenellus_contig71.3.8|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=521bp
MVEPCPYCLSRSRDVRYTVLFLLQSVITLTVSFKTGNNYNVNSASPNEAQ
WIPIPDGVRWGNCLNLGAAMGLFLSCMFQWVLMNTRLGSFLAKRSLHAAV
ALEIILSVGILAFSRVHWPLAVVLGVMAVNGVRWGTRLKDSRHFLGMLVD
MVVEVLGEVRGAAGVPILILLLQVMYLIWWGRALSSSLTGTSMSSGWGGS
VLVLMLFNLYWTCQVFRGIMVVFVSGTMSSCCTSDNRKSKGSGFSQELVE
GKGYLDEYDEYLNDDVLVGEGGRDGGDTDGNPLVSGRNESHDSVSGSGRP
KERGSSRENTLVENTLVAVYLRIALTSSFGSACKGAILSPLGQLRSMVTC
LTSRVREPSGRQISRGGRCVDAFESLTRGYHDLALVHVGAYSTAYSPAVD
EVWKLLRQSGLEAVFAEDLVGPAMNWLSVSMAVLTAAAIGAAPHGHAADR
LIFFTFLVFYVVRSCMQTGTEVLRSAVYAVYLQFVDNPHSLGERFSLIYH
RLERVSELWKYQDQLWGVQV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007603	Choline_transptr-like