prot_C-tenellus_contig70.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-tenellus_contig70.2.1
Unique Name	prot_C-tenellus_contig70.2.1
Type	polypeptide
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length	494

Homology

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BLAST of mRNA_C-tenellus_contig70.2.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.080e-28
Identity = 72/134 (53.73%), Postives = 87/134 (64.93%), Query Frame = 0

Query:  207 GVGLGRGAGSGKIVYLCLLAALQALCEEWGSVRTRLVSSGM--NDAILPTLHPSVAKDIGSHCIVKGLQRIIMRQALDPLTVCAQAMPPWVRALTETFPGLFSLEARLTLMRRTAFGMARAVTHVQDAAKKVEE 338
            G G G GAG     +LCLL+ALQA+CEEW  +R  LVS G    D  LP  HPSV  D+   CIV GLQR    +A +PL +C  ++P W   L   FP LFSLE RL+L+R+TAFGMARAV HVQ+ AK VE+
Sbjct: 1399 GGGGGIGAGFRFGEHLCLLSALQAVCEEWLGLRRSLVSHGSVAGDGDLPDPHPSVLHDLARRCIVSGLQR----KACNPLALCTGSLPSWCVGLPREFPSLFSLETRLSLLRKTAFGMARAVAHVQEKAKNVED 1528

[Close]

BLAST of mRNA_C-tenellus_contig70.2.1 vs. uniprot
Match: D7FHF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF2_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.190e-18
Identity = 60/131 (45.80%), Postives = 76/131 (58.02%), Query Frame = 0

Query:  278 RQALDPLTVCAQAMPPWVRALTETFPGLFSLEARLTLMRRTAFGMARAVTHVQDAAKKVEE----------ADNTSSSGREGSESRGVGDGQGADGLTHRHVLFEGSPRQEVAVPLSDYLSQLGRLGRLTV 398
            +QA +PL +C  ++P W   L   FP LFSLE RL+L+R+TAFGMARAV HVQ+ AK VE+          A  T+ +G  G   R VG   GAD           SP   +A+PL + L QLGRLGRLT+
Sbjct:    7 KQACNPLALCTGSLPSWCVGLPREFPSLFSLETRLSLLRKTAFGMARAVAHVQEKAKNVEDIPAVAAPLRSAAGTARAG--GGVLRRVGGAGGAD-----------SPAS-LAMPLPELLRQLGRLGRLTI 123

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig70.2.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig70.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5K2P5_9PHAE	6.080e-28	53.73	HECT domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D7FHF2_ECTSI	5.190e-18	45.80	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..371
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 451..466
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 426..493
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 428..443
None	No IPR available	PANTHER	PTHR45670	E3 UBIQUITIN-PROTEIN LIGASE TRIP12	coord: 219..415

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig70	contig	C-tenellus_contig70:2588..8308 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig70.2.1	mRNA_C-tenellus_contig70.2.1	Choristocarpus tenellus KU2346	mRNA	C-tenellus_contig70 1075..10688 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-tenellus_contig70.2.1 ID=prot_C-tenellus_contig70.2.1|Name=mRNA_C-tenellus_contig70.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=494bp
MAQKRHSRPEQHAPVMAMPESSASTAQCKEMLHNNPVPTVAEADPDLKTT
AGDHDDEVRPRAEKGRAMGRQDQLPQDAGAAMTEEGASLAIALAPKPKAS
GPDQHRNWTEAGLGVNTSTTAGVPGPECGRDQAAAEPRRPNITHTFFAHP
VVLPPTWSTLDARLMYINSCLLNLGLHSGPSGQWHPESFVASSRGTWGAS
RDSGIPGVGLGRGAGSGKIVYLCLLAALQALCEEWGSVRTRLVSSGMNDA
ILPTLHPSVAKDIGSHCIVKGLQRIIMRQALDPLTVCAQAMPPWVRALTE
TFPGLFSLEARLTLMRRTAFGMARAVTHVQDAAKKVEEADNTSSSGREGS
ESRGVGDGQGADGLTHRHVLFEGSPRQEVAVPLSDYLSQLGRLGRLTVLL
SRDAILDMAEFLFTLLVKGDPTAVRSADPRTSLPTQRSGSPPAPVLTRSD
RPGDESQSSSGAGTRDDVGTSAGAGRSRSFAGAREGTRRQDSC*