prot_C-tenellus_contig693.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig693.1.1
Unique Nameprot_C-tenellus_contig693.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length91
Homology
BLAST of mRNA_C-tenellus_contig693.1.1 vs. uniprot
Match: D8LTB6_ECTSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB6_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 8.300e-33
Identity = 56/85 (65.88%), Postives = 71/85 (83.53%), Query Frame = 0
Query:    6 CTFRSPIPICVTDLQGRDPETFKPLHVVSMTIKDSADHSAAAAGDVLELCQMLDVCEDLDEEAAELVEKFQAKSKRTLLHQVCHV 90
            C   +P  +  TDLQ RDP+TFKPLHVVSMTI+DSAD SAAAAGDVL+LC+ML+ C+DLD +AA+L+  F+ +SKRT+LHQVCH+
Sbjct:   10 CRCTAPCLLFHTDLQQRDPDTFKPLHVVSMTIRDSADDSAAAAGDVLDLCKMLEDCDDLDSDAAKLLNDFRIRSKRTVLHQVCHI 94          
BLAST of mRNA_C-tenellus_contig693.1.1 vs. uniprot
Match: A0A6H5JLZ3_9PHAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.520e-30
Identity = 55/86 (63.95%), Postives = 69/86 (80.23%), Query Frame = 0
Query:    5 ICTFRSPIPICVTDLQGRDPETFKPLHVVSMTIKDSADHSAAAAGDVLELCQMLDVCEDLDEEAAELVEKFQAKSKRTLLHQVCHV 90
            +C       + V DLQ RDP+TFKPLHVVSMTI+DSA+ SAAAAGDVL+LC+ML+ C+DLD  AAEL+  F+ +SKRT+LHQVCH+
Sbjct:   93 VCFESRVFDLVVEDLQQRDPDTFKPLHVVSMTIRDSANDSAAAAGDVLDLCKMLEDCDDLDSNAAELLNDFRIRSKRTVLHQVCHI 178          
BLAST of mRNA_C-tenellus_contig693.1.1 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.620e-24
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 0
Query:   14 ICVTDLQGRDPETFKPLHVVSMTIKDSADHSAAAAGDVLELCQMLDVCEDLDEEAAELVEKFQAKSKRTLLHQVCHV 90
            + V DLQ RDPETFKPLHV++MTIKDS + SAAAA  VLELC+MLD    LD+E A ++E F  K+KRT+LHQVCHV
Sbjct:  316 LVVEDLQSRDPETFKPLHVINMTIKDSFEESAAAADSVLELCRMLDGVSQLDDETAGVLEVFTRKTKRTVLHQVCHV 392          
BLAST of mRNA_C-tenellus_contig693.1.1 vs. uniprot
Match: UPI000719AFA0 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719AFA0)

HSP 1 Score: 70.9 bits (172), Expect = 3.950e-13
Identity = 31/74 (41.89%), Postives = 51/74 (68.92%), Query Frame = 0
Query:   15 CVTDLQGRDPETFKPLHVVSMTIKDSADHSAAAAGDVLELCQMLDVCEDLDEEAAELVEKFQAKSKRTLLHQVC 88
            CV +LQ RD E  +P+H+V++ I+D+ + +   A  + ELCQ++  C+DLD E  EL++ F+++  RT+LH VC
Sbjct:  120 CVAELQQRDVEDNQPVHIVNIDIQDNHEEATIGAFLICELCQLMQECDDLDNEIDELLQDFESRCDRTILHTVC 193          
BLAST of mRNA_C-tenellus_contig693.1.1 vs. uniprot
Match: S4RA90_PETMA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RA90_PETMA)

HSP 1 Score: 69.3 bits (168), Expect = 9.520e-13
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 0
Query:    2 LLSICTFRSPIPICVTDLQGRDPETFKPLHVVSMTIKDSADHSAAAAGDVLELCQMLDVCEDLDEEAAELVEKFQAKSKRTLLHQVC 88
            L+  C  R    +   DL GR+ E+F+P+HV+++ ++D+ + +   A  + ELCQ + + EDLD E  ELV+ F+ KS + +LH VC
Sbjct:   81 LILTCEERVYDQVVEADLSGREQESFQPVHVINVDVQDNHEDATLGAFLICELCQCIQLTEDLDNEIDELVQDFEEKSGKLILHTVC 167          
BLAST of mRNA_C-tenellus_contig693.1.1 vs. uniprot
Match: UPI001CC79605 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC79605)

HSP 1 Score: 66.2 bits (160), Expect = 5.420e-11
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = 0
Query:   16 VTDLQGRDPETFKPLHVVSMTIKDSADHSAAAAGDVLELCQMLDVCEDLDEEAAELVEKFQAKSKRTLLHQVC 88
            V +L  RD ETFKP+HV+++ I+D+ + +   A  + ELC+ +   ED++ E  +L+++F+ +S RT LH VC
Sbjct:  188 VEELNSRDQETFKPVHVINVDIQDNEEEATLGAFLICELCECIQQAEDMENEIDDLLQEFEEQSGRTFLHTVC 260          
BLAST of mRNA_C-tenellus_contig693.1.1 vs. uniprot
Match: A0A8C4QAP5_EPTBU (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4QAP5_EPTBU)

HSP 1 Score: 65.9 bits (159), Expect = 6.150e-11
Identity = 29/73 (39.73%), Postives = 50/73 (68.49%), Query Frame = 0
Query:   16 VTDLQGRDPETFKPLHVVSMTIKDSADHSAAAAGDVLELCQMLDVCEDLDEEAAELVEKFQAKSKRTLLHQVC 88
            V +L  RD ET++P+HV+++ I+D+ + +   A  + ELCQ + + ED+D E  EL+++F+ KS ++ LH VC
Sbjct:  168 VEELHSRDQETYEPVHVINVDIEDNHEDATIGAFLIYELCQCIQLTEDMDNEMDELLQEFEDKSGKSFLHTVC 240          
BLAST of mRNA_C-tenellus_contig693.1.1 vs. uniprot
Match: A0A287D3F5_ICTTR (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ictidomys tridecemlineatus TaxID=43179 RepID=A0A287D3F5_ICTTR)

HSP 1 Score: 62.4 bits (150), Expect = 8.930e-10
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 0
Query:   16 VTDLQGRDPETFKPLHVVSMTIKDSADHSAAAAGDVLELCQMLDVCEDLDEEAAELVEKFQAKSKRTLLHQVC 88
            V DL  R+ ET +P+HVV + I D+ + +   A  + ELCQ + + ED++ E  EL+++FQ +S R  LH +C
Sbjct:  115 VEDLNSREQETCRPVHVVHVDIHDNHEEATLGAFLICELCQCIQLMEDMEHEIDELLQEFQERSGRAFLHSLC 187          
BLAST of mRNA_C-tenellus_contig693.1.1 vs. uniprot
Match: A0A0D2WNJ3_CAPO3 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WNJ3_CAPO3)

HSP 1 Score: 62.0 bits (149), Expect = 9.100e-10
Identity = 25/69 (36.23%), Postives = 46/69 (66.67%), Query Frame = 0
Query:   19 LQGRDPETFKPLHVVSMTIKDSADHSAAAAGDVLELCQMLDVCEDLDEEAAELVEKFQAKSKRTLLHQV 87
            L+ RD  TF+P+H++++ IKD+ + +   A  + ++CQ  D  +DL+ +  E++++FQ K  RTLLH +
Sbjct:  121 LEARDSRTFRPVHIINIDIKDNHEEATVGAALIFKMCQAFDQADDLEVKIEEVLDEFQRKHARTLLHSI 189          
BLAST of mRNA_C-tenellus_contig693.1.1 vs. uniprot
Match: A0A8C8ZR94_PROSS (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Lemuridae TaxID=9445 RepID=A0A8C8ZR94_PROSS)

HSP 1 Score: 61.6 bits (148), Expect = 1.310e-9
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 0
Query:   16 VTDLQGRDPETFKPLHVVSMTIKDSADHSAAAAGDVLELCQMLDVCEDLDEEAAELVEKFQAKSKRTLLHQVC 88
            V DL  R+ ET KP+HVV++ I D+ + +   A  + ELCQ +   ED+D + ++L+  F+ KS R  LH VC
Sbjct:  120 VEDLNSREQETCKPVHVVNVDIPDNQEEATLGAFLICELCQCIHSLEDVDNDISQLLLNFEKKSGRAFLHTVC 192          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig693.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTB6_ECTSI8.300e-3365.88RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5JLZ3_9PHAE1.520e-3063.95RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5KZG9_9PHAE2.620e-2466.23Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
UPI000719AFA03.950e-1341.89RNA polymerase II subunit A C-terminal domain phos... [more]
S4RA90_PETMA9.520e-1337.93RNA polymerase II subunit A C-terminal domain phos... [more]
UPI001CC796055.420e-1139.73RNA polymerase II subunit A C-terminal domain phos... [more]
A0A8C4QAP5_EPTBU6.150e-1139.73RNA polymerase II subunit A C-terminal domain phos... [more]
A0A287D3F5_ICTTR8.930e-1039.73RNA polymerase II subunit A C-terminal domain phos... [more]
A0A0D2WNJ3_CAPO39.100e-1036.23RNA polymerase II subunit A C-terminal domain phos... [more]
A0A8C8ZR94_PROSS1.310e-941.10RNA polymerase II subunit A C-terminal domain phos... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 61..81
NoneNo IPR availableGENE3D3.40.50.2300coord: 3..90
e-value: 4.5E-20
score: 73.9
IPR006811RNA polymerase II subunit APFAMPF04722Ssu72coord: 16..89
e-value: 9.2E-14
score: 51.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig693contigC-tenellus_contig693:4568..6646 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig693.1.1mRNA_C-tenellus_contig693.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig693 1047..7935 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig693.1.1 ID=prot_C-tenellus_contig693.1.1|Name=mRNA_C-tenellus_contig693.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=91bp
MLLSICTFRSPIPICVTDLQGRDPETFKPLHVVSMTIKDSADHSAAAAGD
VLELCQMLDVCEDLDEEAAELVEKFQAKSKRTLLHQVCHV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006811RNA_pol_II_suA